Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq37278 91.5 1e-13 seq33510 91.5 1e-13 >seq37278 Length=37914 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 16549 CTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA-GAGT 16607 |||||| ||||||||||| || ||||||||||||||||| | | || ||||| || | Sbjct 4978 CTCCATAGCTATCTGAAAGCCGTAAAAGCATCTAGCTTCCGTAACCTGAACTTCCTGACT 4919 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA 16667 ||| | | || | | |||||| || || ||||||||||| || ||||| || || || | Sbjct 4918 AAATC-TCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAA 4860 Query 16668 TGTG 16671 |||| Sbjct 4859 TGTG 4856 >seq33510 Length=29102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/118 (78%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 15908 AACACATTATCTTTTTTATTTGACATAACTGACAT--TTTTTGATATTCACTAACTCTCT 15965 || || | ||||| ||| || ||||| | | | | |||||||||||||| ||||||| Sbjct 25446 AAGACCTGATCTTCTTTGTTCGACATGA--GGCCTGCTTTTTGATATTCACCTACTCTCT 25503 Query 15966 TTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 | ||||||||||| ||||| || || | |||||| || ||||| || ||||| ||||| Sbjct 25504 TCTCAAAGAAATTCGTTTTGCCCTCCAGTGAAATGTTCTCCATGAAGTCAAATGGATT 25561 Score = 86.0 bits (94), Expect = 6e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 ||||| || || || |||||||| ||||||||||| |||||||| || ||||| ||||| Sbjct 27082 ATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTGCAATCTGG 27141 Query 16565 AAACCATAAAAGCATCTAGCTTCGGAT 16591 || || || ||||| ||||| || ||| Sbjct 27142 AATCCGTAGAAGCACCTAGCCTCTGAT 27168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461745345890200