Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq112321 107 2e-18 seq60492 87.8 1e-12 seq9979 87.8 1e-12 >seq112321 Length=3025 Score = 107 bits (118), Expect = 2e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||| ||||| |||||||||||| | | | |||| || | Sbjct 2814 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTA 2755 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 ||||||| || ||||| || | ||||| ||||| || || | ||| ||||||||| | Sbjct 2754 GTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGA 2695 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| || || | | | | |||| | | || || || | ||| || ||||||| Sbjct 2694 TTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGC 2635 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 | ||||| || || |||||||| ||||||||||||| Sbjct 2634 CAGTCAGTGTTTTGACAAAGATCTGCATGTTGCCTC 2599 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| |||||||||||| | | | |||| || |||||||| || ||||| Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGAAA 2966 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| ||||| || || | ||| ||||||||| ||||| || || | Sbjct 2965 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTC 2906 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | || ||||| | ||| || |||||||| |||||||| || ||| Sbjct 2905 TCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACA 2846 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 2845 AAGATCTGCAT 2835 >seq60492 Length=3139 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||| ||||| |||||||||||| | | | | || || | Sbjct 1036 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCGA 977 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 |||| || || || || || | |||||||||||| || || | ||| ||||||||| | Sbjct 976 GTTGCTTACCAGCAAAGATGAGCCGCTGTTGGTCTGGTGGAATACCTTCCTTGTCCTGGA 917 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| || || | | | | |||| | || ||||| | ||| || ||||||| Sbjct 916 TTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGC 857 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || ||||| || |||||||| ||||| Sbjct 856 CAGTAAGAGTTTTGACAAAGATCTGCAT 829 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202 ||| ||||| |||||||||||| | ||| | |||| || |||||||| || ||| Sbjct 1248 CTCTTTCTGGATGTTGTAGTCGGATAACGTT--CTTCCGTCCTCTAGTTGTTTACCAGCG 1191 Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262 || || | || || || || || || | ||||||||||||| ||||| || || Sbjct 1190 AAGATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGGATTTTGGATTTGACA 1131 Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322 | | | | |||| | || ||||| | ||| || |||||||| |||||||| || Sbjct 1130 TTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTG 1071 Query 45323 ACAAAGATTTGCAT 45336 |||||||| ||||| Sbjct 1070 ACAAAGATCTGCAT 1057 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTC 45186 |||| || || ||| ||| ||||| |||||||||||| | ||| | |||| || Sbjct 1492 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTT--CTTCCGTCCTC 1435 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||||| || || || || || | ||||| || || || || | ||||||||||||| Sbjct 1434 GAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 1375 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||| || || | | | | |||| | || ||||| | ||| || ||||| Sbjct 1374 GATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTT 1315 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||||| || |||||||| ||||| Sbjct 1314 GCCAGTCAGAGTTTTGACAAAGATCTGCAT 1285 >seq9979 Length=2718 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||| ||||| |||||||||||| | | | | || || | Sbjct 2142 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCGA 2201 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 |||| ||||| || || || | ||||| ||||| || || | ||| ||||||||| | Sbjct 2202 GTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGA 2261 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| || || | | | | |||| | | || || || | ||| || ||||||| Sbjct 2262 TTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGC 2321 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||||||| || |||||||| ||||| Sbjct 2322 CAGTCAGAGTTTTGACAAAGATCTGCAT 2349 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||| ||||| |||||||||||| | | | |||| || | Sbjct 2370 CAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTA 2429 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 ||||||| || || || || | ||||| ||||| || || | ||| ||||||||| | Sbjct 2430 GTTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGA 2489 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| || || | | | | |||| | || || || | ||| || ||||||| Sbjct 2490 TTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGATGGTCTTGC 2549 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||||||| || |||||||| ||||| Sbjct 2550 CAGTCAGAGTTTTGACAAAGATCTGCAT 2577 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--TTCAGTTGGCGATCGTCGTC 45186 |||| || || ||| ||| ||||| |||||||||||| | ||| | |||| || Sbjct 1914 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTT--CTTCCGTCCTC 1971 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || ||||| || || || | ||||| ||||| || || | ||| ||||||||| Sbjct 1972 GAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTG 2031 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||| || || | | | | |||| | || ||||| | ||| || ||||| Sbjct 2032 GATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTT 2091 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||||| || |||||||| ||||| Sbjct 2092 GCCAGTCAGAGTTTTGACAAAGATCTGCAT 2121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394436700079747