Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq112321 116 3e-21 seq37278 111 1e-19 seq33510 111 1e-19 seq9979 111 1e-19 seq60492 107 2e-18 seq22802 102 7e-17 seq73127 82.4 7e-11 >seq112321 Length=3025 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || || || ||||| ||||| || |||||| |||| || ||||| Sbjct 2604 AACATGCAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTCGAAGTAGAACCT 2663 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | |||||| | ||| |||||||||||| | || || ||| Sbjct 2664 AGTGACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGAC 2723 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || |||||||| ||||| | || ||| | || | ||| || Sbjct 2724 CAGCAGCGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTAC 2783 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || || ||||| || ||| | || | || |||| Sbjct 2784 AACATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGTCTCCGTGGTGGTA 2835 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || |||||||| ||||| || |||||| | || || ||||| Sbjct 2835 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 2894 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| |||||||||||| | || || |||||| Sbjct 2895 GACACCATTGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 2954 Query 31313 CAGCGTCTAATATTCGCTGGCAAACA 31338 |||||||| || |||||||| ||||| Sbjct 2955 CAGCGTCTCATTTTCGCTGGTAAACA 2980 >seq37278 Length=37914 Score = 111 bits (122), Expect = 1e-19 Identities = 176/251 (70%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 58059 CCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTT 58118 ||||||||||| | | |||||| ||||||| || ||||| || || || ||| ||| Sbjct 7502 CCCGGCCTGACCTATTCCAACGAACTGATATCTCGGGACGAAGGACTACACTGTGACTTT 7561 Query 58119 GCGTGCCTAATGT---ACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGAC 58175 || ||||| ||| ||| |||| ||||||| | | |||||| ||| | || Sbjct 7562 GCCTGCCTGCTGTTTAACT---ACATCAAGCATAAACCATCACAGGATCGGATCGTAGAG 7618 Query 58176 ATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCC 58235 || |||| ||| |||||||| ||||| || || || || | ||||| |||| || | Sbjct 7619 ATCATCAGCGATGCGGTCGCCATCGAGAAGGAATTCCTCTGCAAAGCCGTACCCGTAGGG 7678 Query 58236 ATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT 58295 || |||||||||| | | ||| | ||||||| |||||||| ||||| |||| Sbjct 7679 CTGATCGGTATGAATGTCGCCCTCATGGCGCAGTACATCGAGTTTGTAGCCGATCGACTC 7738 Query 58296 TTGCTCGAACT 58306 || | ||||| Sbjct 7739 CTGGTAGAACT 7749 >seq33510 Length=29102 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 57509 TGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGA 57568 ||||||||| | | || || ||| | || ||||| | || || || || |||| || Sbjct 28077 TGAACCACTCCTCAAGGACAACCCCAGGAGGTTTGTTCTCTTCCCTATCGAGTATCAGGA 28018 Query 57569 CATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCT 57628 ||| |||| |||||||| ||||| ||||| || || ||||| | ||| ||||| || || Sbjct 28017 CATCTGGAGAATGTACAAGAAGGCTGAAGCTTCCTTCTGGACAGCCGAGGAAGTGGATCT 27958 Query 57629 GTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTG--AGAGAA--ATTTTATTA 57684 || || ||| ||| || ||||| || || ||| | | |||| | | ||| ||| Sbjct 27957 CTCCAAAGATATGAAGGACTGGGAGTCGCTGAAA----CCGCAAGAGCAGCACTTTGTTA 27902 Query 57685 AACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 |||| || | || || ||||| || || ||||| |||||||||||| |||| Sbjct 27901 AACATGTTCTAGCTTTCTTCGCAGCCAGTGACGGTATCGTTAACGAGAATCTGGT 27847 >seq9979 Length=2718 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || |||||||| ||||| || |||||| | || || ||||| Sbjct 2577 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCAAGT 2518 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||||||| | || || |||||| Sbjct 2517 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 2458 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| ||||| | || ||| | || | ||| || ||| Sbjct 2457 CAGCGTCTCATCTTTGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTACAAC 2398 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || ||||| ||||| || ||| | || | || |||| Sbjct 2397 ATCCAGAAAGAGTCCACTCTCCATCTTGTCCTTCGTCTCCGTGGTGGTA 2349 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || |||||||| ||||| || |||||| | || || ||||| Sbjct 2121 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 2062 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||||||| | || || |||||| Sbjct 2061 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 2002 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| | || ||| | || | ||| || ||| Sbjct 2001 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAAC 1942 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || ||||| || || || ||||| || ||| Sbjct 1941 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTT 1909 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || |||||||| ||||| || |||||| |||| || ||||| Sbjct 2349 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTCGAAGTAGAACCTAGT 2290 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||||||| | || || |||||| Sbjct 2289 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 2230 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGA-GCGATTATAA 31371 |||||||| || || ||||| || || | || || | | || || | ||| || || Sbjct 2229 CAGCGTCTTATCTTTGCTGGAAAGCAACTCGAGGA-TGGAAGAACATTATCCGACTACAA 2171 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || ||||| || || || ||||| || ||| | || | || |||| Sbjct 2170 CATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGTCTCCGTGGTGGTA 2121 >seq60492 Length=3139 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || |||||||| ||||| || |||||| | || || ||||| Sbjct 142 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 201 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||||||| | || || || ||| Sbjct 202 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGATCAG 261 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || || | || ||| | ||| | ||| || ||| Sbjct 262 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGACGGAAGGACGTTATCCGACTACAAC 321 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || ||||| ||||| || ||| | || | || |||| Sbjct 322 ATCCAGAAAGAGTCCACTCTCCATCTTGTCCTTCGTCTCCGTGGTGGTA 370 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || ||||| ||||| || |||||| | || || ||||| Sbjct 370 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 429 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||||||| | || || || ||| Sbjct 430 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGATCAG 489 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || || | || || | ||| | ||| || ||| Sbjct 490 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGATGGAAGGACGTTATCCGACTACAAC 549 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || || || ||||| || ||| | || | || |||| Sbjct 550 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGTCTCCGTGGTGGTA 598 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || |||||||| ||||| || |||||| | || || ||||| Sbjct 1285 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 1344 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| ||||||||| || | || || || ||| Sbjct 1345 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 1404 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || || | || ||| | || | ||| || ||| Sbjct 1405 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGACGGAAGAACGTTATCCGACTACAAC 1464 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || ||||| || || || ||||| || ||| Sbjct 1465 ATCCAGAAAGAGTCCACACTCCATCTTGTTCTT 1497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || ||||| || ||||| || |||||| | || || ||||| Sbjct 829 ATGCAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 888 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||||||| | || || ||||| Sbjct 889 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAA 948 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGA-GCGATTATAA 31371 ||||| || || || ||||| || || | || || | | || || | ||| || || Sbjct 949 CAGCGGCTCATCTTTGCTGGTAAGCAACTCGAGGA-TGGAAGAACATTATCCGACTACAA 1007 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || ||||| || || || ||||| || ||| | || | || |||| Sbjct 1008 CATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGTCTCCGCGGTGGTA 1057 >seq22802 Length=4402 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 || |||||||||||||| || ||||| || ||||| ||||| || || || | || || Sbjct 3774 GAAGTGTACTCTACAATCTCTGTACAGAGGTTGCTGCACTTGATTGTACCAAGGTTCTTC 3833 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTC 23175 |||||||| || | || || | |||||||||||||||||| ||||| || ||||| Sbjct 3834 TGGTTGCTCTTCCTGTTACAAGCATCCTTGTAGAGCATGTAAGGCGTTCCAGTCTC 3889 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/183 (72%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||| ||||| ||| |||| || | ||||||||||||||||| ||||| || || || Sbjct 1080 GTAGATGTTACTGGTGTACGGCTCTATGGATTCATTGTTTCCCAGGATCTGGGCCGTGGA 1139 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT-TTTAC 22610 || || ||||| || || ||||| || ||| | || ||||||||||| || ||| | Sbjct 1140 GGCTGTTGGCATTGGGGCTAACAGGAGACTGTTACGCAGGCCGTGCTTTGCTATCTTTGC 1199 Query 22611 TCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATT 22670 | || || | |||||| ||||| || | || || ||| ||||||| || |||| Sbjct 1200 T-TTCAGGGACTTCCAGTCACACAGGTCTGTTGGTGTTACA---TCCCACAAGTCATATT 1255 Query 22671 GCA 22673 ||| Sbjct 1256 GCA 1258 >seq73127 Length=3785 Score = 82.4 bits (90), Expect = 7e-11 Identities = 130/183 (71%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||| ||||| ||| |||| || | ||||||||||||||||| ||||| || || || Sbjct 2512 GTAGATGTTACTGGTGTACGGCTCTATGGATTCATTGTTTCCCAGGATCTGGGCCGTGGA 2571 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT-TTTAC 22610 || || ||||| || || ||||| || ||| | || ||||||||||| || ||| | Sbjct 2572 GGCTGTTGGCATTGGGGCTAACAGGAGACTGTTACGCAGGCCGTGCTTTGCTATCTTTGC 2631 Query 22611 TCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATT 22670 | || || | |||||| || || || | || || ||| ||||||| || ||| Sbjct 2632 T-TTCAGGGACTTCCAGTCACAGAGGTCTGTTGGTGTTACA---TCCCACAAGTCAAATT 2687 Query 22671 GCA 22673 ||| Sbjct 2688 GCA 2690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445027503187440