Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq33510 114 2e-20 seq73127 89.7 6e-13 seq74735 84.2 3e-11 >seq33510 Length=29102 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 ||| || || || || || ||||||||||| || || || | |||||||| | ||| | Sbjct 27852 ATTCTCGTTAACGATACCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTG 27911 Query 34028 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 34087 | || | ||| | || | ||| || || |||||||| || | ||||||||| || Sbjct 27912 CTGCTCTTGCGGTTTCAGCGACTCCCAGTCCTTCATATCTTTGGAGAGATCCACTTCCTC 27971 Query 34088 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 34147 ||||||| || || || || ||||| || ||||| |||||||||| ||||| | ||| Sbjct 27972 GGCTGTCCAGAAGGAAGCTTCAGCCTTCTTGTACATTCTCCAGATGTCCTGATACTCGAT 28031 Query 34148 TGGGAAAATAACAAATCT 34165 ||||| | |||||| || Sbjct 28032 AGGGAAGAGAACAAACCT 28049 Score = 107 bits (118), Expect = 2e-18 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || || || | ||| || || || || || || ||||||| ||||| || | Sbjct 26571 CCTCATCCCTGCTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 26630 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || | ||| |||||||| || || ||||| || || || || ||||||| Sbjct 26631 TGAGCCAGAAGATTGCAGCAAATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGG 26690 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGG 33780 | | | | || | || | ||| ||| | |||||||| | ||||| |||| Sbjct 26691 CTACCACGCGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCGG 26750 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||||||| |||||| || || ||||| |||||||| || Sbjct 26751 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCATTGAA 26790 >seq73127 Length=3785 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 ||| | || || |||||||||||||||| |||| || | || ||||| || || ||| Sbjct 3344 GCAGCATAGTAGATGGTTTCAAAGATCTCAATATTGAGTTTCTGGGCTTCTGGACTCTCA 3403 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 |||||| | | | ||| || || ||||| |||| |||||||| || || ||||| || Sbjct 3404 AATGGAAACCTCATGAGGATGAAAGCGTCGGCTAGCCCTTGAACTCCGATTCCGATGGGA 3463 Query 62799 CTATGTCTCTTATTAGA 62815 | ||| ||| |||| || Sbjct 3464 CGATGCCTCATATTGGA 3480 >seq74735 Length=1216 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGA 62744 || || |||||||||||||||| |||| || | || ||||| || || ||||||||| Sbjct 761 TAGTAGATGGTTTCAAAGATCTCAATATTGAGTTTCTGGGCTTCTGGACTCTCAAATGGA 820 Query 62745 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62804 | | | ||||| || ||||| || | |||||||| || || ||||| || | ||| Sbjct 821 AACCTCATCAGAATGAAAGCGTCGGCAAGCCCTTGAACTCCGATGCCGATGGGACGATGC 880 Query 62805 CTCTTATTAGA 62815 ||| |||| || Sbjct 881 CTCATATTGGA 891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628773622218960