Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq33510 98.7 9e-16 seq37278 82.4 7e-11 >seq33510 Length=29102 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/226 (70%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || || || || || |||||||| || ||||| | || ||||| ||||| ||||| || Sbjct 26573 TCATCCCTGCTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 26632 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||||||||| || || || || || ||||| || || ||||| ||| Sbjct 26633 AGCCAGAAGATTGCAGCAAATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGGCT 26692 Query 11774 ACTACTCTTTCTCCATATACCTTGTTGCTAGAT-----ATCCATTTTCTGGCCCAATCAG 11828 || || | ||| | | ||||| | | || | ||||| || ||||| || | Sbjct 26693 ACCACGCGTTCGC--TGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCGG 26750 Query 11829 CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATG 11874 | ||||| ||||| | || ||||| || || || ||||| || Sbjct 26751 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCATTGAATAATTG 26796 >seq37278 Length=37914 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/144 (74%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 11705 CGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCT 11764 |||||||| | ||||||||| || || || || ||||| ||||| || |||||||| | | Sbjct 6740 CGTTTTTTCAACCAAAATATGGCTGCGAAAGACCCAGAGAAGAAAATGCCCTCCACTGAT 6681 Query 11765 GCAAATGCTACTACTCTTTCTCC--AT-ATACCTTGTTGCTAGATATCCATTTTCTGGCC 11821 ||||||||||||| || || | || || ||| | || || ||||| || ||| Sbjct 6680 GCAAATGCTACTAGCCTCTCAGCGAATGATGCCTCGGAACTTGAAATCCACTTCAATGCC 6621 Query 11822 CAATCAGCTTTCTTTTTTACGCAT 11845 || || || || ||||| || ||| Sbjct 6620 CAGTCTGCCTTTTTTTTGACACAT 6597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467748179148080