Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq60492 105 7e-18 seq9979 105 7e-18 seq112321 98.7 1e-15 >seq60492 Length=3139 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | || || ||| || || ||||||||| Sbjct 1253 GTTGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCTAGTTGTTTACCA 1194 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| |||||||||||||| || || || || || ||||| |||||| ||| Sbjct 1193 GCGAAGATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGGATTTTGGATTTG 1134 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || || ||||||| ||| | |||||||| |||| ||| Sbjct 1133 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTT 1074 Query 139748 TTTACGAATATTTGCATA 139765 || || || || |||||| Sbjct 1073 TTGACAAAGATCTGCATA 1056 >seq9979 Length=2718 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | ||| || ||| || || ||||||||| Sbjct 2381 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTGTTTACCA 2440 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| || || || || ||||| ||||| |||||| ||| Sbjct 2441 GCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 2500 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || || || |||| ||| | |||||||| |||| ||| Sbjct 2501 ACATTCTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAGAGTT 2560 Query 139748 TTTACGAATATTTGCATA 139765 || || || || |||||| Sbjct 2561 TTGACAAAGATCTGCATA 2578 >seq112321 Length=3025 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 ||||| || ||||| || ||| | ||| || ||| ||||| ||||||||||| | Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGAAA 2966 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT 139693 || ||||| ||||| || || || || ||||| ||||| |||||| ||| | | Sbjct 2965 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTC 2906 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | ||||| | || || ||||||| ||| | |||||||| |||| ||||| || Sbjct 2905 TCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACA 2846 Query 139754 AATATTTGCATA 139765 || || |||||| Sbjct 2845 AAGATCTGCATA 2834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | ||| || ||| || || ||||||||| Sbjct 2803 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTGTTTACCA 2744 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || || || || ||||| ||||| |||||| ||| Sbjct 2743 GCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 2684 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || || || || | ||| | |||||||| |||| ||| Sbjct 2683 ACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGTCAGTGTT 2624 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 2623 TTGACAAAGATCTGCAT 2607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495241730514400