Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq33510 125 1e-23 seq23025 87.8 3e-12 >seq33510 Length=29102 Score = 125 bits (138), Expect = 1e-23 Identities = 160/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || || || ||||| ||||| || || || || ||||||| ||||| || | Sbjct 26571 CCTCATCCCTGCTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 26630 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | |||||||| || || || ||||| || || || |||||||||| Sbjct 26631 TGAGCCAGAAGATTGCAGCAAATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGG 26690 Query 50102 CAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 50158 | || | | || | || |||| | ||| | |||||||| | ||||| |||| Sbjct 26691 CTACCACGCGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCGG 26750 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||||||| |||||| || || ||||| |||||||| || Sbjct 26751 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCATTGAA 26790 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 ||| || || || || |||||||||||||| || || || | |||||||| | ||| || Sbjct 27852 ATTCTCGTTAACGATACCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTG 27911 Query 50406 TTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 50465 | || | ||| | || | ||| || || |||||||| || | ||| ||||| || Sbjct 27912 CTGCTCTTGCGGTTTCAGCGACTCCCAGTCCTTCATATCTTTGGAGAGATCCACTTCCTC 27971 Query 50466 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 50525 ||||||| || || || || ||||| || ||||| |||||||||| ||||| | ||| Sbjct 27972 GGCTGTCCAGAAGGAAGCTTCAGCCTTCTTGTACATTCTCCAGATGTCCTGATACTCGAT 28031 Query 50526 TGGGAAAATAACAAATCT 50543 ||||| | |||||| || Sbjct 28032 AGGGAAGAGAACAAACCT 28049 >seq23025 Length=8248 Score = 87.8 bits (96), Expect = 3e-12 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttG-TTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAA 80736 |||| || |||||| ||| |||||||||| || || || || ||||||||||| ||||| Sbjct 3896 CACTGAA-AGTTTTCTTGGTTTCCTTGTGCAGGTTAGAAACAGCTATTCTGGCTGCTAAG 3838 Query 80737 ATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 80796 || ||||| |||||||| | || || || ||||| | || || |||| || ||| Sbjct 3837 ATTGCATAGTCTGGATGCTTGGTTGTCATGGTAGCTGCAGTCTCAGCCGCCAAGGTATCC 3778 Query 80797 AATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 | || || || || || |||| || || || | || || ||||| Sbjct 3777 AGCTCAACTGTGGTGACCCCATGGTAGATACCATTTATCACTTTCAT 3731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717078206615480