Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq33510 107 2e-18 seq37278 95.1 1e-14 >seq33510 Length=29102 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 |||||||| | ||||| || || | ||| |||||||| || || | ||| |||| Sbjct 25425 TAAAAATCTGCTTCTAAGCTGAAGACCTGATCTTCTTTGTTCGACATGAGGCCTGCTTTT 25484 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||||| ||||| || |||||||| || ||||| || |||||||| || || ||| Sbjct 25485 TGATATTCACCTACTCTCTTCTCAAAGAAATTCGTTTTGCCCTCCAGTGAAATGTTCTCC 25544 Query 13644 ATAAAATCAAATGGATT 13660 || || ||||||||||| Sbjct 25545 ATGAAGTCAAATGGATT 25561 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||| || || || ||||| || || ||||| | |||||||| ||||| ||||| | Sbjct 26571 CCTCATCCCTGCTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 26630 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| || |||||||||||||| || || || || || ||||| || || ||||| | Sbjct 26631 TGAGCCAGAAGATTGCAGCAAATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGG 26690 Query 14014 CTA 14016 ||| Sbjct 26691 CTA 26693 >seq37278 Length=37914 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/124 (79%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 14187 TCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG--ACCATTGTACTTCC-GAG 14243 ||||||||||||||||| || ||||||||||||||||||| ||| || |||||| || Sbjct 4977 TCCATAGCTATCTGAAAGCCGTAAAAGCATCTAGCTTCCGTAACC--TGAACTTCCTGAC 4920 Query 14244 TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAAT 14303 | |||||| || ||| |||||||| || || ||||| || || ||||| || || | Sbjct 4919 T-AAATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGA 4861 Query 14304 ATGT 14307 |||| Sbjct 4860 ATGT 4857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478932808863800