Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq33510 107 2e-18 >seq33510 Length=29102 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||| || || || ||||| || || ||||| | |||||||| ||||| ||||| | Sbjct 26571 CCTCATCCCTGCTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 26630 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| || |||||||| |||||||| || || || || ||||| || || ||||| | Sbjct 26631 TGAGCCAGAAGATTGCAGCAAATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGG 26690 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 ||| | ||||| | || ||| ||||| ||||| || ||||| || | Sbjct 26691 CTACCACGCGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCGG 26750 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC 13910 || || || | | || |||||||| ||||||||||| || || Sbjct 26751 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCATTGAATAATTGGTC 26799 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 |||||||| | ||||| || || | ||| |||||||| || || | ||| |||| Sbjct 25425 TAAAAATCTGCTTCTAAGCTGAAGACCTGATCTTCTTTGTTCGACATGAGGCCTGCTTTT 25484 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||||||| ||||| || ||||| || || ||||| || |||||||| || || ||| Sbjct 25485 TGATATTCACCTACTCTCTTCTCAAAGAAATTCGTTTTGCCCTCCAGTGAAATGTTCTCC 25544 Query 13432 ATAAAATCGAATGGATT 13448 || || || |||||||| Sbjct 25545 ATGAAGTCAAATGGATT 25561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477795497187480