Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq33510 120 4e-22 >seq33510 Length=29102 Score = 120 bits (132), Expect = 4e-22 Identities = 160/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || || || | ||| ||||| || || || || ||||||| ||||| || | Sbjct 26571 CCTCATCCCTGCTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 26630 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | ||||||||||| || || ||||| || || || || ||||||| Sbjct 26631 TGAGCCAGAAGATTGCAGCAAATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGG 26690 Query 42207 CAATAAGTCTCTCTCCATAACCGGC-AC--TGTCATGTATCCACTTTTGAGCCCAATCGG 42263 | | | | || | || | ||| || ||| | |||||||| | ||||| |||| Sbjct 26691 CTACCACGCGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCGG 26750 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||||||| |||||| || || ||||| |||||||| || Sbjct 26751 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCATTGAA 26790 Score = 109 bits (120), Expect = 7e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510 ||| ||||| || || |||||||||||||| || || || | |||||||| | ||| | Sbjct 27852 ATTCTCGTTAACGATACCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTG 27911 Query 42511 TTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 42570 | || | |||| | | | ||| || || |||||||| || | ||| ||||| || Sbjct 27912 CTGCTCTTGCGGTTTCAGCGACTCCCAGTCCTTCATATCTTTGGAGAGATCCACTTCCTC 27971 Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAAT 42630 | ||||| || || ||||| ||||| || ||||| ||||||| || ||||| | || Sbjct 27972 GGCTGTCCAGAAGGAAGCTTCAGCCTTCTTGTACATTCTCCAGATGTCCTGATACTCGAT 28031 Query 42631 TGGGAAAATAACAAATCT 42648 ||||| | |||||| || Sbjct 28032 AGGGAAGAGAACAAACCT 28049 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 42324 TATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGG 42383 |||| || | |||||| ||||| | | ||| ||||||||||| ||||| ||||| || | Sbjct 27074 TATCCTTGATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTG 27133 Query 42384 CCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 | ||||| ||||||||||| || || ||||| | |||| || ||| Sbjct 27134 CAATCTGGAATCCGTAGAAGCACCTAGCCTCTGATGCCTGAACCTCT 27180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670026728051320