Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9979 127 1e-24 seq60492 122 6e-23 seq112321 116 3e-21 seq8964 86.0 5e-12 seq45117 82.4 6e-11 >seq9979 Length=2718 Score = 127 bits (140), Expect = 1e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| ||||| || |||||||| ||| || |||| |||| |||| ||| Sbjct 2374 ATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTG 2433 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| ||||| | || | ||| || ||||| |||||| ||||| ||||| ||||| Sbjct 2434 TTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTT 2493 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| | || ||||| || || |||||| || | ||| ||||| || || || Sbjct 2494 GGATTTGACATTCTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGATGGTCTTGCCAGT 2553 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||||||||| ||||| || |||||| Sbjct 2554 CAGAGTTTTGACAAAGATCTGCATA 2578 Score = 113 bits (124), Expect = 3e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| ||||| || |||||||| ||| || |||| | || || | ||| Sbjct 2146 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCGAGTTG 2205 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | || | ||| || ||||| ||||| ||||| ||||| ||||| Sbjct 2206 CTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTT 2265 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| | || ||||| || ||| |||||| || | ||| ||||| || || || Sbjct 2266 GGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGT 2325 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||||||||| ||||| || |||||| Sbjct 2326 CAGAGTTTTGACAAAGATCTGCATA 2350 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| ||||| || |||||||| ||| || |||| |||| || | || Sbjct 1918 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGCTG 1977 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | || | ||| || ||||| ||||| ||||| ||||| ||||| Sbjct 1978 CTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTT 2037 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| | || ||||| || || |||||| || | ||| ||||| || || || Sbjct 2038 GGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGT 2097 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||||||||| ||||| || |||||| Sbjct 2098 CAGAGTTTTGACAAAGATCTGCATA 2122 >seq60492 Length=3139 Score = 122 bits (134), Expect = 6e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || |||||||| ||| || |||| |||| |||| ||| Sbjct 1260 ATGGAGTGTTGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCTAGTTG 1201 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| |||||| | || | |||||| || || |||||| || || ||||| ||||| Sbjct 1200 TTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGGATTTT 1141 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| | || ||||| || || |||||| || | ||| ||||| || || || Sbjct 1140 GGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGT 1081 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||||||||| ||||| || |||||| Sbjct 1080 CAGAGTTTTGACAAAGATCTGCATA 1056 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| ||||| || |||||||| ||| || | || |||| || | ||| Sbjct 345 ATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCCTCGAGTTG 286 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | || | ||| || || || |||||| ||||| ||||| ||||| Sbjct 285 CTTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATTTT 226 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| | || ||||| || || |||||| || | ||| ||||| || || || Sbjct 225 GGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGT 166 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||||||||| ||||| || |||||| Sbjct 165 CAGAGTTTTGACAAAGATCTGCATA 141 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || ||||| ||||| || |||||||| ||| || |||| |||| || Sbjct 1494 AACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTC 1435 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || ||||| | || | ||| || || || ||||| || || ||||| Sbjct 1434 GAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 1375 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| || ||| | || ||||| || || |||||| || | ||| ||||| || Sbjct 1374 GATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTT 1315 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||||||||| ||||| || |||||| Sbjct 1314 GCCAGTCAGAGTTTTGACAAAGATCTGCATA 1284 >seq112321 Length=3025 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 15173 TCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15232 ||||| || |||||||| ||| || |||| |||| || | |||||| |||||| | Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGAAA 2966 Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 || | ||| || ||||| |||||| ||||| ||||| |||||| || ||| | Sbjct 2965 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTC 2906 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || ||||| || || |||||| || | ||| ||||| || || ||||||||||| ||| Sbjct 2905 TCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACA 2846 Query 15353 AAAATTTGCATA 15364 || || |||||| Sbjct 2845 AAGATCTGCATA 2834 >seq8964 Length=41004 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || |||||||| ||| ||||| |||||||||| || || | | | Sbjct 844 TAACACCAAATGAAGAGTGCTTTCTTTACAAATGTTGTAATTAGAGAGTGTTTTGTCATT 785 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 |||||||||||| || || | || | || ||||| || |||||||||| |||||| Sbjct 784 TTCTAATTGTTTACCTGCAAAGATAAGCCGCTGTTGATCAGGAGGAATTCCTTTTTTGTC 725 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTA-AGGTAATGG 15329 ||| || ||||| |||| |||||||| ||| || || | |||| || | Sbjct 724 TTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCCAGAGGT-ATTG 666 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| || || ||||| |||||||||| ||| Sbjct 665 TTTTACCAGTTAGTGTTTTCACAAAAATTTTCAT 632 >seq45117 Length=16876 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/219 (68%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAA----TTCTCG 15206 ||| || |||||||| ||| || || || ||||||| ||||| |||| Sbjct 6267 TAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAAT----TAGAAATTGTTCTGT 6212 Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 | |||||||| ||| | || | |||| | || ||||| || ||||||||||||| Sbjct 6211 CATCTTCTAACTGTCTACCTGTAAATATAAGCCGCTGTTGATCCGGAGGAATTCCTTCTT 6152 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 |||| ||| || ||||| |||| |||||||| ||| || || | | | Sbjct 6151 TGTCTTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCAAGAGATA 6092 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT 15365 | |||||||| || || ||||| || ||||||||||||| Sbjct 6091 TTGTTTTACCAGTAAGTGTTTTCACTAAAATTTGCATAT 6053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361593864878187