Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq45117 82.4 5e-11 >seq45117 Length=16876 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 33146 CCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAA 33205 ||||| ||| ||||||||||| | || || || |||||||||| ||| || Sbjct 6278 CCTCTGCGCCGTAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGA--AA 6221 Query 33206 TTGAGTTGG--TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTA 33263 ||| || || || || || | || ||||||| | || || || |||| || | Sbjct 6220 TTGTTCTGTCATCTTCTAACTGTCTACCTGTAAATATAAGCCGCTGTTGATCCGGAGGAA 6161 Query 33264 TGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGT 33323 | |||||||| || |||| |||||| ||| ||| || || |||| ||| | Sbjct 6160 TTCCTTCTTTGTCTTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTT 6101 Query 33324 CCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | |||| ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 6100 CAAGAGATATTGTTTTACCAGTAAGTGTTTTCACTAAAATTTGCAT 6055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318262408279086