Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq45117 100 2e-16 seq48055 91.5 1e-13 seq8964 91.5 1e-13 >seq45117 Length=16876 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGA-CGCTCAT 43967 |||||||||||| || ||||| || || |||||| |||| ||||| | |||| Sbjct 6267 TAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGA-AATTGTTCTGTCAT 6209 Query 43968 CGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT 44027 | || || ||| | |||| |||||| | ||| || || ||| |||| | |||||||| | Sbjct 6208 CTTCTAACTGTCTACCTGTAAATATAAGCCGCTGTTGATCCGGAGGAATTCCTTCTTTGT 6149 Query 44028 CTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTG 44087 || ||| || ||| || | ||| ||||||| ||| || || || | | |||| Sbjct 6148 CTTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCAAGAGATATTG 6089 Query 44088 TTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| || | || ||||| || |||||||| Sbjct 6088 TTTTACCAGTAAGTGTTTTCACTAAAATTTGCAT 6055 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 |||||||||||| || ||||| || || |||||| |||| | | | ||||| Sbjct 6951 TAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGAAAGTGTTCTGTCATC 6892 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || || ||| | ||||||||||| | || || || ||| |||| | |||||||| || Sbjct 6891 TTCTAAATGTCTACCTGCAAATATAAGCCCCTGTTGATCCGGAGGAATTCCTTCTTTGTC 6832 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||| || ||| || | ||| ||||||| ||| | || || | | ||||| Sbjct 6831 TTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTGAACTTCCAGAGATATTGT 6772 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | |||| || | || ||||| | |||||||| Sbjct 6771 TCTACCAGTAAGTGTTTTCACTACAATTTGCAT 6739 >seq48055 Length=12036 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| || | ||| || |||||||| || || | |||||| || | | | ||||| Sbjct 1288 TAAGACAAGATGCAGAGTGCTCTCGTTCTGTACATTATAGTCAGACAGTGTTCTTTCATC 1347 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || || || || |||||||| || | || || || || |||| | ||||| ||||| Sbjct 1348 TTCTAACTGATTACCTGCAAAAATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTATC 1407 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| ||| || || ||| || || | ||| | || || | || ||||| Sbjct 1408 TTGGATTTTTGATTTTACGTTATCAATGGTTTCCGACGGTACAACTTCCAGAGTTATTGT 1467 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| || | ||| |||| |||||||||||| Sbjct 1468 TTTACCAGTAAGAGTTTTCATAAATATTTGCAT 1500 >seq8964 Length=41004 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 |||||||||||| || ||||| ||||| ||| || |||| | | |||| Sbjct 844 TAACACCAAATGAAGAGTGCTTTCTTTACAAATGTTGTAATTAGAGAGTGTTTTGTCATT 785 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || |||||||| |||||||| || | ||| || || || |||| | |||| ||| || Sbjct 784 TTCTAATTGTTTACCTGCAAAGATAAGCCGCTGTTGATCAGGAGGAATTCCTTTTTTGTC 725 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||| || ||| || | ||| ||||||| ||| || || || | | ||||| Sbjct 724 TTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCCAGAGGTATTGT 665 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| |||| || |||||||| |||| ||| Sbjct 664 TTTACCAGTTAGTGTTTTCACAAAAATTTTCAT 632 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | || ||| || | ||| | |||||||| || ||||||||||| || Sbjct 1611 ACCACCTCTTAGTCGTAAGACAAGATGCAAGGTGCTCTCCTTCTGAATATTATAGTCAGA 1552 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | ||| || || ||||| ||||||||||| ||| || || || |||| Sbjct 1551 AAGTGTTCTTCCATGTTCTAACTGTTTACCTGCAAATATAGGCCGCTGTTGATCAGGAGG 1492 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||| || ||| || | ||| | ||||| || || || Sbjct 1491 GATTCCTTCCTTGTCTTGAATCTTAGATTTTACGTTTTCAATGGAATCTGATGGTTCAAC 1432 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||||||||| || || ||||||| |||||||| Sbjct 1431 TTCCAGAGTTATTGTTTTACCAGTACGTGTTTTCACAATAATTTGCAT 1384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354204226957836