Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq9979 113 4e-20 seq60492 107 2e-18 seq112321 95.1 1e-14 >seq9979 Length=2718 Score = 113 bits (124), Expect = 4e-20 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| ||||| ||||||| | | ||||| ||||| ||||||||||| ||| Sbjct 1967 TCCTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTG 2026 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | ||||| | ||||| ||| |||||| | ||| || || |||| ||||| Sbjct 2027 TCCTGGATTTTGGATTTGACATTCTCGATGGTGTCA-CTTGGTTCTACCTCAAGGGTGAT 2085 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| |||||||| |||||||||||||| Sbjct 2086 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2121 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || ||||| || ||||||| | | ||||| ||||| ||||||||||| ||| Sbjct 2423 TCCTCTAGTTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTG 2482 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | ||||| | ||||| ||| |||||| | ||| || || |||| ||||| Sbjct 2483 TCCTGGATTTTGGATTTGACATTCTCGATGGTGTCA-CTTGGTTCTACTTCAAGGGTGAT 2541 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| |||||||| |||||||||||||| Sbjct 2542 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2577 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || || ||||| ||||||| | | ||||| ||||| ||||||||||| || Sbjct 2194 ATCCTCGAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTT 2253 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| | ||||| ||| |||||| | || || || | ||||| Sbjct 2254 GTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGAT 2313 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| |||||||| |||||||||||||| Sbjct 2314 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2349 >seq60492 Length=3139 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || || || || ||||||| | | ||||||||||| ||||||||||| ||| Sbjct 296 TCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGAATACCTTCCTTG 237 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGAT 94971 || | ||||| | ||||| ||| |||||| | |||| | || |||| ||||| Sbjct 236 TCCTGGATTTTGGATTTGACATTCTCGATGGTGTCA-CTTGGTTCTACCTCAAGGGTGAT 178 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| |||||||| |||||||||||||| Sbjct 177 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 142 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || ||||| || | ||||| | | |||||||||||| |||||||| || ||| Sbjct 1211 TCCTCTAGTTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTG 1152 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGAT 94971 || | ||||| | ||||| ||| |||||| | |||| | || |||| ||||| Sbjct 1151 TCCTGGATTTTGGATTTGACATTCTCGATGGTGTCA-CTTGGTTCTACCTCAAGGGTGAT 1093 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| |||||||| |||||||||||||| Sbjct 1092 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1057 Score = 105 bits (116), Expect = 6e-18 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || || || || ||||||| | | ||||||||||| ||||||||||| || Sbjct 525 ATCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCTTCCTT 466 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGA 94970 ||| | ||||| | ||||| ||| |||||| | |||| | || |||| |||| Sbjct 465 GTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCA-CTTGGTTCTACCTCAAGGGTGA 407 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| || ||||| |||||||||||||| Sbjct 406 TGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 370 Score = 105 bits (116), Expect = 6e-18 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || || || || ||||||| | | || || ||||| ||||||||||| || Sbjct 984 ATCCTCGAGTTGCTTACCAGCAAAGATGAGCCGCTGTTGGTCTGGTGGAATACCTTCCTT 925 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGA 94970 ||| | ||||| | ||||| ||| |||||| | |||| | || |||| |||| Sbjct 924 GTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCA-CTTGGTTCTACCTCAAGGGTGA 866 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || |||||||||||||| |||||||||||||| Sbjct 865 TGGTCTTGCCAGTAAGAGTTTTGACAAAGATCTGCAT 829 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || || || || ||||||| | | ||||||||||| |||||||| || ||| Sbjct 1439 TCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTG 1380 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGAT 94971 || | ||||| | ||||| ||| |||||| | |||| | || |||| ||||| Sbjct 1379 TCCTGGATTTTGGATTTGACATTCTCGATGGTGTCA-CTTGGTTCTACCTCAAGGGTGAT 1321 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| |||||||| |||||||||||||| Sbjct 1320 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1285 >seq112321 Length=3025 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || ||||| || | || || | | ||||| ||||| ||||||||||| ||| Sbjct 2989 TCCTCGAGTTGTTTACCAGCGAAAATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTG 2930 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGAT 94971 || | ||||| | ||||| | | |||||| | |||| | || |||| ||||| Sbjct 2929 TCCTGGATTTTGGATTTGACATTCTCAATGGTGTCA-CTTGGTTCTACCTCAAGGGTGAT 2871 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| |||||||| |||||||||||||| Sbjct 2870 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2835 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || ||||| || | ||||| | | ||||| ||||| ||||||||||| ||| Sbjct 2761 TCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTG 2702 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| | ||||| ||| |||||| | || || || | |||||| Sbjct 2701 TCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATG 2642 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || ||||| || ||||| ||||||||||||||| Sbjct 2641 GTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATG 2606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447548118110520