Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq16776 192 9e-45 >seq16776 Length=2401 Score = 192 bits (212), Expect = 9e-45 Identities = 193/247 (78%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | | || ||||||||||| || |||||||| || || || Sbjct 1242 CGCCAAGCGTCACCGAAAAGTGTTGCGTGATAACATCCAGGGTATCACCAAACCCGCCAT 1183 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||||||||| || ||| |||| ||| | |||| ||||||| Sbjct 1182 CCGTCGTCTCGCTCGTCGTGGTGGAGTAAAACGTATCTCCGGACTCATCTACGAAGAGAC 1123 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG- 16610 |||| ||| ||||| ||||| | | | ||| |||| |||||| || || |||| | Sbjct 1122 CCGTGGTGTCCTGAAGGTCTTCTTAGAAAACGTCATCCGTGATGCCGTC-AC-ATACTGT 1065 Query 16611 -AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 ||||||| || | ||||| |||||| ||||||| |||||||||| |||||||||||| Sbjct 1064 GAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCCTTGAAACGTCAA 1005 Query 16670 GGCCGTA 16676 || |||| Sbjct 1004 GGGCGTA 998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78953956491651