Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq33510 91.5 2e-13 >seq33510 Length=29102 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||| || ||||| ||| || | ||||||||| || ||||| | || ||| Sbjct 25424 TTAAAAATCTGCTTCTAAGCTGAAGACCTGATCTTCTTTGTTCGACATGAGGCCTGCTTT 25483 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||| |||| ||||| || || || ||||| || || || |||| ||| || || Sbjct 25484 TTGATATTCACCTACTCTCTTCTCAAAGAAATTCGTTTTGCCCTCCAGTGAAATGTTCTC 25543 Query 21247 CATAAAATCAAATGGATT 21264 ||| || ||||||||||| Sbjct 25544 CATGAAGTCAAATGGATT 25561 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 |||||||| || || | |||||| || ||||| | || ||||||||||| | || || Sbjct 26573 TCATCCCTGCTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 26632 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| || |||| ||||||| ||| || || || |||||||| || || ||||| || Sbjct 26633 AGCCAGAAGATTGCAGCAAATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGGCT 26692 Query 21620 ACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCC 21679 || | ||||| | ||| | | | |||| | ||||| || ||||| | ||| Sbjct 26693 ACCACGCGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCGGCC 26752 Query 21680 TT-TTCTTTA 21688 || ||||||| Sbjct 26753 TTCTTCTTTA 26762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531019127882680