Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq33510 95.1 3e-14 seq22802 91.5 4e-13 >seq33510 Length=29102 Score = 95.1 bits (104), Expect = 3e-14 Identities = 140/194 (72%), Gaps = 11/194 (6%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT-GA--ACAATG----AACGTTCATTCGC 22487 ||||| ||||| || ||||||||||| ||||| || |||| | | || || || Sbjct 26760 AAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCGACCACAAAGTAGCCAGGTACA---GC 26704 Query 22488 GGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGC 22547 ||||| | | || ||||| | ||| || ||||| || || || ||| ||||| ||| Sbjct 26703 -GAACGCGTGGTAGCCTTTGCCGCGGTCGAGGGCATCTTTTTCTCGGGATCATTTGCTGC 26645 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 |||||| ||||| || ||||||| | | ||||| || || || || || ||||| | || Sbjct 26644 AATCTTCTGGCTCAAGAAACGTGGATTAATGCCAGGCCTTACATTCTCCAATGAACTCAT 26585 Query 22608 TAGCCGAGATGAGG 22621 ||| | ||||||| Sbjct 26584 CAGCAGGGATGAGG 26571 >seq22802 Length=4402 Score = 91.5 bits (100), Expect = 4e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 |||||| | || |||| | || |||| | || | ||||| ||||| || || ||| Sbjct 3928 GCACAGCATCTGTGGTATCAGATTCTGGAAGCACAAACGGAGACTGGAACGCCTTACATG 3869 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| ||| | || ||| | ||| ||||||| || ||||||||||||| || Sbjct 3868 CTCTACAAGGATGCTTGTAACAGGAAGAGCAACCAGAAGAACCTTGGTACAATCAAGTGC 3809 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 |||||||| ||||| |||||| | || ||||| | || || ||| Sbjct 3808 AGCAACCTCTGTACAGAGATTGTAGAGTACACTTCACCTGAAGAG 3764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301139166798674