Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9979 89.7 4e-13 seq112321 87.8 2e-12 seq60492 84.2 2e-11 >seq9979 Length=2718 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || ||| ||||||| || | | Sbjct 2349 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTCGAAGTAGAACCTAGT 2290 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| || || ||||| ||||| || || || || || Sbjct 2289 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 2230 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | || ||||||||||| |||| |||| | ||| || ||| Sbjct 2229 CAGCGTCTTATCTTTGCTGGAAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAAC 2170 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || ||||| || ||| | ||| Sbjct 2169 ATCCAGAAAGAGTCCACACTCCAT 2146 >seq112321 Length=3025 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| |||||| | ||||| || | || ||| ||||||| || | Sbjct 2603 CAACATGCAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTCGAAGTAGAACC 2662 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||||||| | |||||| || || ||||| ||||| || || || || Sbjct 2663 TAGTGACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGA 2722 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | || || || ||||| || || | |||| | ||| || Sbjct 2723 CCAGCAGCGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTA 2782 Query 24167 TAACATTCAAAAAGAATCTACAATTCAT 24194 ||||| || ||||| || ||| | ||| Sbjct 2783 CAACATCCAGAAAGAGTCCACACTCCAT 2810 >seq60492 Length=3139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || ||| | || || || | | Sbjct 370 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 429 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| || || ||||| ||||| || || || ||||| Sbjct 430 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGATCAG 489 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCA-GCGATTATAA 24169 ||| | || || | | || ||||||||||| |||| || |||| | ||| || || Sbjct 490 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGATGGAAG-GACGTTATCCGACTACAA 548 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||| || ||||| || ||| | ||| Sbjct 549 CATCCAGAAAGAGTCCACACTCCAT 573 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || ||| | || || || | | Sbjct 829 ATGCAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 888 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| || || ||||| ||||| || || || || ||| Sbjct 889 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAA 948 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | || ||||||||||| |||| |||| | ||| || ||| Sbjct 949 CAGCGGCTCATCTTTGCTGGTAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAAC 1008 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || ||||| || ||| | ||| Sbjct 1009 ATCCAGAAAGAGTCCACACTCCAT 1032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429241159874085