Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq112321 96.9 3e-15 seq9979 95.1 1e-14 >seq112321 Length=3025 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || ||||| || || |||||||| ||| Sbjct 2833 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 2774 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||||||||| || || || ||| |||| | |||||||||||| || || Sbjct 2773 AATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGA 2714 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| |||| | ||| | || || | | || | Sbjct 2713 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACT 2654 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || || ||||| || || ||||||||| Sbjct 2653 TCGAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATG 2606 >seq9979 Length=2718 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || ||||| || || |||||||| ||| Sbjct 1895 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 1954 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | |||||| |||||||| || || |||| | |||||||||||| || || Sbjct 1955 AACGTTCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 2014 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| |||| | ||| | || || | | || | Sbjct 2015 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACC 2074 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || |||||||| || || |||||||| Sbjct 2075 TCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2121 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC-T 131066 ||||| || | ||| || || | ||| | || ||||| || || |||||||| ||| | Sbjct 2123 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 2182 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 ||| | | | ||||| || ||||| || || |||| | |||||||||||| || || Sbjct 2183 AATGTTCTTCCA-TCCTCGAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 2241 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| |||| | ||| | || || | | || | Sbjct 2242 AATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTAC 2301 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || |||||||| || || |||||||| Sbjct 2302 TTCGAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2349 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || ||||| || || |||||||| ||| Sbjct 2351 CCACCACGGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAT 2410 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||||||||| || || || || |||| | |||||||||||| || || Sbjct 2411 AATGTTCTTCCGTCCTCTAGTTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGA 2470 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| |||| | ||| | || || | | || | Sbjct 2471 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACT 2530 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || |||||||| || || |||||||| Sbjct 2531 TCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471230397482880