Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq116518 127 1e-24 seq45117 100 2e-16 seq67875 96.9 2e-15 seq8964 89.7 3e-13 seq112321 86.0 4e-12 seq41231 86.0 4e-12 seq50389 82.4 5e-11 >seq116518 Length=6790 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| | ||||||||||||||| || || ||||| Sbjct 2502 AAGCCCGTTCCCTTGGCTGTGGTTTCACCAGATAGTAGATAGGGACAGTGGAAACCTCGT 2561 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2562 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2596 >seq45117 Length=16876 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 || |||||||||||||||||||| || || ||||||||||| ||| | | || Sbjct 6269 CGTAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGAAATTGTTCTGTCA 6210 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || ||||| ||| | || | |||||| || || |||||||| | || | ||||||||| Sbjct 6209 TCTTCTAACTGTCTACCTGTAAATATAAGCCGCTGTTGATCCGGAGGAATTCCTTCTTTG 6150 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || ||| || || || || | | |||||| ||||||||| | | || Sbjct 6149 TCTTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCAAGAGATATT 6090 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| || | |||||||| || || ||||| Sbjct 6089 GTTTTACCAGTAAGTGTTTTCACTAAAATTTGCAT 6055 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||| | || | |||||||| |||| |||||||||||| |||||||||||||| Sbjct 7880 TACCTCCTTTTAACAGTAACACCAACTGAACAGTGCTCTCCTTACAAATATTGTAATCAG 7821 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | | || ||||| ||||| || ||||| || || | |||||||| | | Sbjct 7820 AAAGTGTTCTTCCATCTTCTAACTGTTTACCTGCAAAGATAAGCCTCTGTTGATCAGGAG 7761 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||| ||| | || ||||| | | |||||| ||||| Sbjct 7760 GAATTCCTTCTCTGTCTTCAATCATAGCTTTTACATTTTCAATGGTATCTGACGGTTCAA 7701 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | | || |||||||| || | |||||| | || || ||||| Sbjct 7700 CTTCCAGGGATATTGTTTTACCAGTAATTGTTTTCTCTAAAATTTGCAT 7652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 38094 CCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAA 38153 ||||| | || ||| |||||||| ||||||| || || ||||||||||| ||| | Sbjct 7647 CCTCTAAGCCGTAACTCCAAATGAGGAGTGCTTTCATTACTAATATTGTAATTAGAAAGT 7588 Query 38154 ACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACG 38213 | || || | ||| ||||| || ||||| | || || |||| ||| || | | Sbjct 7587 GTTCTGTCATCTTATAACTGTTTACCTGCAAAGAGAAGCCGCTGTTCATCAGAAGAAATT 7528 Query 38214 CCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCT 38273 ||||||||||| ||| || || ||||| | | |||||| ||||||||| Sbjct 7527 CCTTCTTTGTCTTGAATCTTAGATTTTACATTTTCAATGGTATCTGACGGTTCAACTTCA 7468 Query 38274 AATGTAATAGTTT-TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||| |||| |||| || | |||| ||| || || ||||| Sbjct 7467 AAAGAAATTGTTTGTACCAGTAATTGTTTCCACTAAAATTTGCAT 7423 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 || |||||||||||||||||||| || || ||||||||||| ||| | | || Sbjct 6953 CGTAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGAAAGTGTTCTGTCA 6894 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || ||||| ||| | || |||||||| || | |||||||| | || | ||||||||| Sbjct 6893 TCTTCTAAATGTCTACCTGCAAATATAAGCCCCTGTTGATCCGGAGGAATTCCTTCTTTG 6834 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || ||| || || || || | | |||||| || |||||| | | || Sbjct 6833 TCTTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTGAACTTCCAGAGATATT 6774 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| |||| || | |||||||| | || ||||| Sbjct 6773 GTTCTACCAGTAAGTGTTTTCACTACAATTTGCAT 6739 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 |||||||| |||| |||||||||| | ||||||||||||||| | || || Sbjct 7406 AACACCAACTGAACAGTGCTCTCCGTACAAATATTGTAATCAGAAAGGGATTTTTTATCT 7347 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 ||||| | ||| || ||||| || || || ||||||| | || | ||||||||||| Sbjct 7346 TCTAACTCTTTACCTGCAAAGATAAGCCGCTGTTGATTAGGAGGAATTCCTTCTTTGTCT 7287 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 ||| || || || || | | |||||| || |||||| | | || ||| Sbjct 7286 TGAATCTTAGATTTTACGTTTTCAATGGTATCTGATGGTTGAACTTCAAGAGATATTGTT 7227 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || |||||||| | || ||||| Sbjct 7226 TTACCAGTAAATGTTTTCACTACAATTTGCAT 7195 >seq67875 Length=1699 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG- 20007 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | Sbjct 492 CTCTCTTCAAAGTTCTTTTCAACGTTCCCTCACGGTACTTGTTGACTATCGGTCTCGTGC 433 Query 20008 GTAATATTTAGCCTT 20022 || |||| |||||| Sbjct 432 ATAGTATTGAGCCTT 418 >seq8964 Length=41004 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | || || || | ||| | ||||||||||| |||||||| || |||| Sbjct 1612 TACCACCTCTTAGTCGTAAGACAAGATGCAAGGTGCTCTCCTTCTGAATATTATAGTCAG 1553 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | | | ||||| ||||| || |||||||| | || |||||||| | | Sbjct 1552 AAAGTGTTCTTCCATGTTCTAACTGTTTACCTGCAAATATAGGCCGCTGTTGATCAGGAG 1493 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||| || || || || | | | |||| ||||| Sbjct 1492 GGATTCCTTCCTTGTCTTGAATCTTAGATTTTACGTTTTCAATGGAATCTGATGGTTCAA 1433 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || |||||||| || |||||||| | || ||||| Sbjct 1432 CTTCCAGAGTTATTGTTTTACCAGTACGTGTTTTCACAATAATTTGCAT 1384 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 |||||||||||||||||||| || || ||| ||||||| ||| | || | Sbjct 843 AACACCAAATGAAGAGTGCTTTCTTTACAAATGTTGTAATTAGAGAGTGTTTTGTCATTT 784 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 ||||||||||| || ||||| || || || |||||||| | || | |||| |||||| Sbjct 783 TCTAATTGTTTACCTGCAAAGATAAGCCGCTGTTGATCAGGAGGAATTCCTTTTTTGTCT 724 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 ||| || || || || | | |||||| ||||||||| | | || ||| Sbjct 723 TGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCCAGAGGTATTGTT 664 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || | |||||||| || || | ||| Sbjct 663 TTACCAGTTAGTGTTTTCACAAAAATTTTCAT 632 >seq112321 Length=3025 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||| || ||| ||| || || || ||||| || | Sbjct 2835 TACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGG 2776 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || | | |||| |||| |||||| || || || || || || || || || | | Sbjct 2775 ATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTG 2716 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| |||||| ||||| || ||||||| || || || | | ||| | Sbjct 2715 GAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTA 2656 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| | || || || || || |||| ||||| || || ||||||||||| Sbjct 2655 CTTCGAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTT 2604 >seq41231 Length=11754 Score = 86.0 bits (94), Expect = 4e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6326 GAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTT 6385 ||| | ||||||||| |||||||| ||||||||||| |||||| ||| || || || | Sbjct 2479 GAAGTTTTTCGGGTGTGAACTTGGAGCTCAGACGCAATTTGATGTCAAGAATGACCGTTA 2420 Query 6386 CATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCG 6445 ||| || || ||||| || || | ||||||| || || | || | | || || Sbjct 2419 CATTGTGAATGGATCTCACGACAGTTCCAAGCTTCAAGAAATCCTGGCTGCATTCATCAT 2360 Query 6446 CAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 ||||| || || || | || || ||||||||||| || || || Sbjct 2359 TAAGTTCGTTCTTTGCCCTGATTGTGATAACCCGGAAACAGATCT 2315 >seq50389 Length=23789 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 || ||||||||||||| |||||||||||| ||||||||||| | | | |||| Sbjct 10468 CGTAACACCAAATGAACAGTGCTCTCCTTACAAATATTGTAATTAAATAGTGTTTGTTCA 10527 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 | ||||| ||||| || ||||| || || || |||||||| | ||| | ||||||| Sbjct 10528 TTTTCTAACTGTTTACCTGCAAAGATAAGCCGCTGTTGATCAGGGGGATTTCTTTCTTTG 10587 Query 38223 TCCATAAT 38230 || |||| Sbjct 10588 TCTTTAAT 10595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334405875815417