Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq48055 100 2e-16 seq8964 98.7 9e-16 seq60492 95.1 1e-14 seq45117 91.5 1e-13 seq50389 84.2 2e-11 >seq48055 Length=12036 Score = 100 bits (110), Expect = 2e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||| | || ||| | || |||||| | || || | ||||| | |||| Sbjct 1500 ATGCAAATATTTATGAAAACTCTTACTGGTAAAACAATAACTCTGGAAGTTGTACCGTCG 1441 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | || | || ||||||| || || ||||| ||||| ||||| || Sbjct 1440 GAAACCATTGA-TAACGTAAAATCAAAAATCCAAGATAAGGAAGGAATTCCTCCTGATCA 1382 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGA 25156 |||| ||||||||||||| || || || ||||||||||| Sbjct 1381 ACAGAGGATTATTTTTGCAGGTAATCAGTTAGAAGATGA 1343 >seq8964 Length=41004 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 ||| ||||| |||| ||||| || || | || |||||| | || | | ||||| || Sbjct 626 GGATCAATGAAAATTTTTGTGAAAACACTAACTGGTAAAACAATACCTCTGGAAGTTGAA 685 Query 25053 TCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCC 25108 |||| || || || || || | || | || | ||| |||||| |||| ||||| Sbjct 686 CCGTCAGATACCATTGAAAACGTAA---AATCTAAGATTCAA-GACAAAAAAGGAATTCC 741 Query 25109 ACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGG 25168 ||||| ||||||||| |||| ||||| || |||||||||||| |||| || | Sbjct 742 TCCTGATCAACAGCGGCTTATCTTTGCAGGTAAACAATTAGAAAATGACAAAACACTCTC 801 Query 25169 CGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGA 25223 ||||||| ||| |||||| ||| || ||||| ||| || || |||||| Sbjct 802 TAATTACAACATTTGTAAAGAAAGCACTCTTCATTTGGTGTTACTGCCTAGAGGA 856 >seq60492 Length=3139 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | || || || ||||||| | || || || | | Sbjct 829 ATGCAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 888 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | || |||||| ||||| ||||| |||||||| |||||| Sbjct 889 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAA 948 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || ||||| || || ||| | || |||| | || | ||| ||||| Sbjct 949 CAGCGGCTCATCTTTGCTGGTAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAAC 1008 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || ||| | || || Sbjct 1009 ATCCAGAAAGAGTCCACACTCCATCTTGTCCT 1040 >seq45117 Length=16876 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || |||||| | || | | ||||| || |||| Sbjct 6055 ATGCAAATTTTAGTGAAAACACTTACTGGTAAAACAATATCTCTTGAAGTTGAACCGTCA 6114 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || || | || | || | ||| ||||||||||| ||||| || || Sbjct 6115 GATACCATTGAAAACGTAA---AATCTAAGATTCAA-GACAAAGAAGGAATTCCTCCGGA 6170 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| |||| ||| | || | ||| ||||||||||| | || | |||| Sbjct 6171 TCAACAGCGGCTTATATTTACAGGTAGACAGTTAGAAGATGACAGAACAATTTCTAATTA 6230 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGA 25223 ||||||| || ||| ||| || ||||| ||| || ||| |||||| Sbjct 6231 CAATATTTGTAATGAAAGCACTCTTCATTTGGTGTTACGGCGCAGAGGA 6279 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| ||||| || || |||||| || |||| ||||| || | ||| |||||| Sbjct 6832 GACAAAGAAGGAATTCCTCCGGATCAACAGGGGCTTATATTTGCAGGTAGACATTTAGAA 6891 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||||| | || | ||||||||||| || ||| ||| || ||||| ||| || Sbjct 6892 GATGACAGAACACTTTCTAATTACAATATTTGTAATGAAAGCACTCTTCATTTGGTGTTA 6951 Query 25212 AGGCTAAGAGGA 25223 ||| |||||| Sbjct 6952 CGGCGCAGAGGA 6963 >seq50389 Length=23789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||| | | ||| ||||| ||||||||| |||| ||||| || ||||| |||||| Sbjct 10589 GACAAAGAAAGAAATCCCCCTGATCAACAGCGGCTTATCTTTGCAGGTAAACAGTTAGAA 10530 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | || | ||||||||||| || || ||| | ||||| ||| || Sbjct 10529 AATGAACAAACACTATTTAATTACAATATTTGTAAGGAGAGCACTGTTCATTTGGTGTTA 10470 Query 25212 AGGCTAAGAGGAGGAA 25227 |||| | |||||||| Sbjct 10469 CGGCTCAAAGGAGGAA 10454 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/132 (74%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 |||||||||||| ||| | ||| ||||||||| ||||||| || || ||||| |||||| Sbjct 11258 GACAAAGAAGGGTATCCTCTTGATCAACAGCGGCTTATTTT-GCAGGTAAACAGTTAGAA 11200 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||||| | || | ||||||||||| || ||| ||| || ||||| ||| || Sbjct 11199 GATGACAGAACACTTTCTAATTACAATATTTGTAATGAAAGCACTCTTCATTTGGTGTTA 11140 Query 25212 AGGCTAAGAGGA 25223 || |||||| Sbjct 11139 CTGCCTAGAGGA 11128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432627677900705