Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq37278 102 9e-17 seq33510 84.2 2e-11 >seq37278 Length=37914 Score = 102 bits (112), Expect = 9e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 |||||| || || || || ||||| || |||||||||||||| | ||| ||||| ||| Sbjct 4978 CTCCATAGCTATCTGAAAGCCGTAAAAGCATCTAGCTTCCGTAACCTGAACTTCCTGACT 4919 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 ||||||||| || || ||||||||||| || |||||| || ||||| ||||| Sbjct 4918 AAATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGC 4865 >seq33510 Length=29102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| |||||| | ||||| | | ||| |||||||||||||| || |||| |||| Sbjct 26591 TCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTGAGCCAGAAGATTGCAGCA 26650 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || || || ||||| || || || || || ||||| || || | ||||| || | Sbjct 26651 AATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGGCTACCACGCGTTC-GCTGTA 26709 Query 93254 TTTGCGGAATTACTGCT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 || | || || | |||||| || | ||||| ||||| || ||||| | | || Sbjct 26710 CCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTTACAGCTGG 26769 Query 93313 TAGTGTTTCGATAGCGTTAAATA 93335 || |||||||| || || |||| Sbjct 26770 TATGGTTTCGATGGCATTGAATA 26792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555937754498680