Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq118799 93.3 9e-14 seq43276 93.3 9e-14 seq113194 91.5 3e-13 seq82456 91.5 3e-13 seq68344 91.5 3e-13 seq66935 91.5 3e-13 seq33308 91.5 3e-13 seq73576 87.8 4e-12 seq33309 86.0 1e-11 >seq118799 Length=13112 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 ||| |||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 8503 GATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 8444 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 8443 GAGCCCCACGTTGGGC 8428 >seq43276 Length=1670 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1005 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 946 Query 142561 AGCCCCACATCGGGCA 142576 |||||||| | ||||| Sbjct 945 AGCCCCACGTTGGGCA 930 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 244 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 185 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 184 AGCCCCACGTTGGGC 170 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 749 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 690 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 689 AGCCCCACGTTGGGC 675 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 488 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 429 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 428 CCCACGTTGGGC 417 >seq113194 Length=28664 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 28462 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 28403 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 28402 AGCCCCACGTTGGGC 28388 >seq82456 Length=1845 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 303 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 244 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 243 AGCCCCACGTTGGGC 229 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1561 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 1502 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 1501 AGCCCCACGTTGGGC 1487 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1301 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1242 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1241 CCCACGTTGGGC 1230 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||| ||||||||||| ||||||||||||| ||||||||||||| Sbjct 790 ATCGCCCGGCTAGCTCCGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 731 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 730 AGCCCCACGTTGGGC 716 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| |||| |||||||| Sbjct 1047 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCTTGGGTTCG 988 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 987 AGCCCCACGTTGGGC 973 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||| ||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1818 ATCGCCCGGCTAGCGCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 1759 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 1758 AGCCCCACGTTGGGC 1744 >seq68344 Length=9181 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/67 (91%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 2579 CTCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 2638 Query 142114 CCGCCAG 142120 ||||||| Sbjct 2639 CCGCCAG 2645 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/67 (91%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 4532 CTCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 4591 Query 142114 CCGCCAG 142120 ||||||| Sbjct 4592 CCGCCAG 4598 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/67 (91%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 5991 CTCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 6050 Query 142114 CCGCCAG 142120 ||||||| Sbjct 6051 CCGCCAG 6057 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 142057 CTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCC 142115 |||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| ||| Sbjct 900 CTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTCCC 959 Query 142116 GCCAG 142120 ||||| Sbjct 960 GCCAG 964 Score = 86.0 bits (94), Expect = 1e-11 Identities = 60/67 (90%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| ||||||| |||||||||| | Sbjct 3672 CTCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTCGCGGGTTCGAGTC 3731 Query 142114 CCGCCAG 142120 ||||||| Sbjct 3732 CCGCCAG 3738 Score = 86.0 bits (94), Expect = 1e-11 Identities = 60/67 (90%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||| ||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 8753 CTCTGTGGCGAAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 8812 Query 142114 CCGCCAG 142120 ||||||| Sbjct 8813 CCGCCAG 8819 >seq66935 Length=12852 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 173 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 114 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 113 AGCCCCACGTTGGGC 99 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 420 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 361 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 360 CCCACGTTGGGC 349 >seq33308 Length=19841 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/67 (91%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 3020 CTCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 2961 Query 142114 CCGCCAG 142120 ||||||| Sbjct 2960 CCGCCAG 2954 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/67 (91%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 3889 CTCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 3830 Query 142114 CCGCCAG 142120 ||||||| Sbjct 3829 CCGCCAG 3823 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/67 (91%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 5302 CTCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 5361 Query 142114 CCGCCAG 142120 ||||||| Sbjct 5362 CCGCCAG 5368 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/67 (91%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 6544 CTCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 6603 Query 142114 CCGCCAG 142120 ||||||| Sbjct 6604 CCGCCAG 6610 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/67 (91%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 10426 CTCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 10485 Query 142114 CCGCCAG 142120 ||||||| Sbjct 10486 CCGCCAG 10492 Score = 84.2 bits (92), Expect = 4e-11 Identities = 68/80 (85%), Gaps = 3/80 (4%) Strand=Plus/Plus Query 142042 ATTAAACGCATGTCTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTT 142100 || ||||| || | |||||||||||| ||| ||||| ||||||||||||| |||||||| Sbjct 432 ATAAAACG--TGCCCCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTT 489 Query 142101 GCGGGTTCGACCCCCGCCAG 142120 |||||||||| |||| ||| Sbjct 490 GCGGGTTCGAGTCCCGTCAG 509 >seq73576 Length=16295 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||| Sbjct 12345 AGCCCGGTTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGCGGGTTCGAG 12404 Query 142563 CCCCACATCGGGC 142575 ||| |||||||| Sbjct 12405 TCCCTCATCGGGC 12417 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||| Sbjct 12854 AGCCCGGTTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGCGGGTTCGAG 12913 Query 142563 CCCCACATCGGGC 142575 ||| |||||||| Sbjct 12914 TCCCTCATCGGGC 12926 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||||||||| ||||| ||||||| ||||| ||||||||| Sbjct 13197 AGCCCGATTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGCGGGTTCGAG 13256 Query 142563 CCCCACATCGGGC 142575 |||||||||||| Sbjct 13257 TCCCACATCGGGC 13269 >seq33309 Length=4627 Score = 86.0 bits (94), Expect = 1e-11 Identities = 60/67 (90%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 310 CTCTGTGGCGCAATCGGATAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 369 Query 142114 CCGCCAG 142120 ||| ||| Sbjct 370 CCGTCAG 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026090477332487