Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq112321 114 1e-20 seq9979 113 4e-20 seq60492 104 2e-17 seq50389 84.2 2e-11 seq45117 84.2 2e-11 >seq112321 Length=3025 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || || ||||| || |||||||| ||| Sbjct 2836 ATACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG 2777 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | || || ||||||||||||||| ||||||||||||| ||||| || Sbjct 2776 GATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGT 2717 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| || || ||| | | || | |||||| | | ||| Sbjct 2716 GGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCT 2657 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| ||||| ||||| ||||| ||||||||| Sbjct 2656 ACTTCGAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATG 2606 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 ||||| || |||||||| ||| | || | || || ||||||||||||||| | Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGAAA 2966 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||||||||| ||||| || ||||| ||||| ||||| || || ||| | | Sbjct 2965 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTC 2906 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| |||||| | | ||| || || | ||| | || ||||| ||||||||||| ||| Sbjct 2905 TCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACA 2846 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 2845 AAGATCTGCAT 2835 >seq9979 Length=2718 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || || ||||| || |||||||| ||| Sbjct 2348 ATACCACCACGGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCG 2407 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | || || |||||||||||||| ||||||||||||| ||||| || Sbjct 2408 GATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGT 2467 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| || || ||| | | || | |||||| | | ||| Sbjct 2468 GGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCT 2527 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||||||||| ||||| |||||||| Sbjct 2528 ACTTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2577 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || || ||||| || |||||||| ||| Sbjct 2120 ATACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG 2179 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||| || ||||| || ||||| |||| |||||||| ||||| || Sbjct 2180 GATAATGTTCTTCCATCCTCGAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGG 2239 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| || || ||| | | || | |||||| | | ||| Sbjct 2240 GGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCT 2299 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||||||||| ||||| |||||||| Sbjct 2300 ACTTCGAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2349 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 |||| || ||||| || | | || | ||| | || || ||||| || |||||||| | Sbjct 1891 AAAT-CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGT 1949 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 || | || | || || || || || ||||| |||| |||||||| ||||| | Sbjct 1950 CGGATAACGTTCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTG 2009 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | ||||| ||||| ||||| || || ||| | | || | |||||| | | || Sbjct 2010 GGGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTT 2069 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | ||| | || ||||| ||||||||||| ||||| |||||||| Sbjct 2070 CTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2121 >seq60492 Length=3139 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || | ||| | || || ||||| || |||||||| ||| Sbjct 1058 ATACCACCGCGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG 999 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||| || ||||| |||||||| ||||||| ||||||||||| || Sbjct 998 GATAATGTTCTTCCATCCTCGAGTTGCTTACCAGCAAAGATGAGCCGCTGTTGGTCTGGT 939 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| || || ||| | | || | |||||| | | ||| Sbjct 938 GGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCT 879 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || |||||||| ||||| |||||||| Sbjct 878 ACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACAAAGATCTGCAT 829 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || || ||||| || |||||||| ||| Sbjct 1286 ATACCACCACGGAGACGAAGGACAAGATGGAGTGTTGACTCTTTCTGGATGTTGTAGTCG 1227 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | || || ||||||||||||||| |||||||||| || || || || Sbjct 1226 GATAACGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGT 1167 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| || || ||| | | || | |||||| | | ||| Sbjct 1166 GGAATACCCTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCT 1107 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||||||||| ||||| |||||||| Sbjct 1106 ACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1057 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || || ||||| || |||||||| ||| Sbjct 371 ATACCACCACGGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCG 312 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | || || ||||| |||||||| |||| |||||||| || || || Sbjct 311 GATAACGTCCTTCCGTCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGT 252 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| || || ||| | | || | |||||| | | ||| Sbjct 251 GGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCT 192 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||||||||| ||||| |||||||| Sbjct 191 ACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 142 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 |||| || ||||| || | | ||| | ||| | || || ||||| || |||||||| | Sbjct 1515 AAAT-CCACCACGGAGACGAAGAACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGT 1457 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 || | || | || || ||||| |||||||| |||| |||||||| || || | Sbjct 1456 CGGATAACGTTCTTCCGTCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTG 1397 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | ||||| || || ||||| || || ||| | | || | |||||| | | || Sbjct 1396 GGGGAATACCCTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTT 1337 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | ||| | || ||||| ||||||||||| ||||| |||||||| Sbjct 1336 CTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1285 >seq50389 Length=23789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | ||||||| || |||| | ||||||||||| |||||||| |||||||| Sbjct 10969 ATCTTCCAACTGTTTACTTGCAAAGATACGCCGCTGTTGGTCAGGAGGAATTCCTTCTTT 11028 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| |||||| ||||| | ||||| || || | | ||| || | || | | Sbjct 11029 GTCTTGAATCTTAGATTTTACATCTTCAATAGTATCTGATGGTTCAACTTTCAGAGATAT 11088 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || || ||||| || ||||| ||||| Sbjct 11089 TGTTTTACCAGTAAGTGTTTTCACTAAAATGTGCAT 11124 >seq45117 Length=16876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | ||| |||| | | || || |||||||| ||||||||||| |||||||| Sbjct 6210 ATCTTCTAACTGTCTACCTGTAAATATAAGCCGCTGTTGATCCGGAGGAATTCCTTCTTT 6151 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| |||||| ||||| | ||||| ||| || | | ||| || || | | | Sbjct 6150 GTCTTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCAAGAGATAT 6091 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || || ||||| || ||||| ||||| Sbjct 6090 TGTTTTACCAGTAAGTGTTTTCACTAAAATTTGCAT 6055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419455400708484