Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq33510 145 1e-29 seq37278 98.7 2e-15 seq22802 87.8 3e-12 >seq33510 Length=29102 Score = 145 bits (160), Expect = 1e-29 Identities = 169/224 (75%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 42612 TTCAAGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669 ||||| ||||| || || || || ||| | ||||||||||| ||||||||||| || | Sbjct 26790 TTCAATGCCATCGAAACCATACCAGCTGTA--AAGAAGAAGGCCGACTGGGCGCTGAAGT 26733 Query 42670 GGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGG 42729 ||||||| | || | || | |||| | ||||||||||| |||| ||||||| Sbjct 26732 GGATCGACCACAAAGTAGCCAGGTACAGCGAACGCGTGGTAGCCTTTGCCGCGGTCGAGG 26673 Query 42730 GCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG--TCGAT 42787 ||||||| |||||||| | || || | ||||||||||||||| | | ||| | || Sbjct 26672 GCATCTTTTTCTCGGGATCATTTGCTGCAATCTTCTGGCTCAAGAA--ACGTGGATTAAT 26615 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||| || || || ||||| || ||||||||||||||||| |||| Sbjct 26614 GCCAGGCCTTACATTCTCCAATGAACTCATCAGCAGGGATGAGG 26571 >seq37278 Length=37914 Score = 98.7 bits (108), Expect = 2e-15 Identities = 170/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTT 42848 ||||| || |||| || |||||||| || ||||||| || || || | |||||| Sbjct 7502 CCCGGCCTGACCTATTCCAACGAACTGATATCTCGGGACGAAGGACTACACTGTGACTTT 7561 Query 42849 GCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCC 42908 |||||||| ||||| | | || ||| ||| || || || |||| ||| || | Sbjct 7562 GCCTGCCTGCTGTT---TAACTACATCAAGCATAAACCATCACAGGATCGGATCGTAGAG 7618 Query 42909 ATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC-ACGCAGTCGCTGCCCGTGTC 42967 ||||||| || || || | ||||||||||| |||||| | || || | ||||| Sbjct 7619 ATCATCAGCGATGCGGTCGCCATCGAGAAGGAATTCCTCTGCAAAGCCG-TACCCGTAGG 7677 Query 42968 CCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT 43027 ||| |||| ||||| || ||||||| |||||||| ||| || ||||| | || Sbjct 7678 GCTGATCGGTATGAATGTCGCCCTCATGGCGCAGTACATCGAGTTTGTAGCCGATCGACT 7737 Query 43028 CCTG 43031 |||| Sbjct 7738 CCTG 7741 >seq22802 Length=4402 Score = 87.8 bits (96), Expect = 3e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| |||||||| || |||||||| ||||||||||| || || |||| || || Sbjct 3777 GTGTACTCTACAATCTCTGTACAGAGGTTGCTGCACTTGATTGTACCAAGGTTCTTCTGG 3836 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTC 244833 ||| ||| ||| || || ||||||||||||||| | ||| || ||||| Sbjct 3837 TTGCTCTTCCTGTTACAAGCATCCTTGTAGAGCATGTAAGGCGTTCCAGTCTC 3889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942773875146320