Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq112321 158 3e-33 seq9979 152 1e-31 seq60492 149 1e-30 seq8964 111 4e-19 seq71731 87.8 4e-12 seq120249 86.0 1e-11 >seq112321 Length=3025 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || ||||| | ||| ||||| ||||| || ||||||| Sbjct 2833 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 2774 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | |||||| |||| |||||| || |||||||| |||||||| || ||| Sbjct 2773 AATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGA 2714 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||||||||| | ||| || || || || | || || | ||||||| Sbjct 2713 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACT 2654 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||| || ||||| || |||||||| Sbjct 2653 TCGAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCAT 2607 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||||| | || | |||||| || | |||||| || ||||| Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGAAA 2966 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||| || ||||| || ||||||||||| | ||| || || Sbjct 2965 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTC 2906 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | |||||| || || ||||| ||||| || |||||||| ||||| Sbjct 2905 TCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACA 2846 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2845 AAGATCTGCAT 2835 >seq9979 Length=2718 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || ||||| | ||| ||||| ||||| || ||||||| Sbjct 2351 CCACCACGGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAT 2410 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | |||||| |||| |||||| || || ||||| |||||||| || ||| Sbjct 2411 AATGTTCTTCCGTCCTCTAGTTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGA 2470 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||||||||| | ||| || || || || | || || | ||||||| Sbjct 2471 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACT 2530 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||||||| ||||| || |||||||| Sbjct 2531 TCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2577 Score = 150 bits (166), Expect = 4e-31 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || ||||| | ||| ||||| ||||| || ||||||| Sbjct 2123 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 2182 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| || || | ||| ||||| || ||||| |||||||| || |||||| Sbjct 2183 AATGTTCTTCCATCCTCGAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGG---TCTGGG 2239 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || ||||||||||| | ||| || || || || | || || | |||| Sbjct 2240 GGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCT 2299 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| ||||| || |||||||| ||||| || |||||||| Sbjct 2300 ACTTCGAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2349 Score = 147 bits (162), Expect = 5e-30 Identities = 172/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||| || ||||| | ||| ||||| ||||| || ||||||| Sbjct 1894 TCCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 1953 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||| | |||||| || | || ||||| || ||||| |||||||| || ||||| Sbjct 1954 TAACGTTCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGG---TCTGG 2010 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || ||||| || ||||||||||| | ||| || || || || | || || | ||| Sbjct 2011 GGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTC 2070 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || ||||| ||||| || |||||||| ||||| || |||||||| Sbjct 2071 TACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2121 >seq60492 Length=3139 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || ||||| | ||| ||||| ||||| || ||||||| Sbjct 368 CCACCACGGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAT 309 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| | |||||| || | ||| || || || ||||| |||||||| ||| ||| Sbjct 308 AACGTCCTTCCGTCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGA 249 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||||||||| | ||| || || || || | || || | |||||| Sbjct 248 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACC 189 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||||||| ||||| || |||||||| Sbjct 188 TCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 142 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || ||||| | || ||||| ||||| || ||||||| Sbjct 1283 CCACCACGGAGACGAAGGACAAGATGGAGTGTTGACTCTTTCTGGATGTTGTAGTCGGAT 1224 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| | |||||| |||| |||||| || |||||||| ||||| || ||| ||| Sbjct 1223 AACGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGA 1164 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||||||||| | ||| || || || || | || || | |||||| Sbjct 1163 ATACCCTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACC 1104 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||||||| ||||| || |||||||| Sbjct 1103 TCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1057 Score = 147 bits (162), Expect = 5e-30 Identities = 172/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||| || ||||| | ||| ||||| ||||| || ||||||| Sbjct 1512 TCCACCACGGAGACGAAGAACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 1453 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||| | |||||| || | ||| || || || ||||| |||||||| ||| ||||| Sbjct 1452 TAACGTTCTTCCGTCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGA---TCTGG 1396 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || || || ||||||||||| | ||| || || || || | || || | ||| Sbjct 1395 GGGAATACCCTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTC 1336 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || ||||| ||||| || |||||||| ||||| || |||||||| Sbjct 1335 TACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1285 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || ||||| | ||| ||||| ||||| || ||||||| Sbjct 596 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 537 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| | ||| || || | ||| || || || ||||| |||||||| ||| |||||| Sbjct 536 AACGTCCTTCCATCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGA---TCTGGG 480 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || ||||||||||| | ||| || || || || | || || | |||| Sbjct 479 GGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCT 420 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || ||||| || ||||| || |||||||| Sbjct 419 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 370 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| || ||||| | ||| ||||| ||||| || ||||||| Sbjct 1055 CCACCGCGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 996 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| || || | ||| || || || ||||| || |||||||| ||| Sbjct 995 AATGTTCTTCCATCCTCGAGTTGCTTACCAGCAAAGATGAGCCGCTGTTGGTCTGGTGGA 936 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||||||||| | ||| || || || || | || || | |||||| Sbjct 935 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACC 876 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || ||||| ||||| || |||||||| Sbjct 875 TCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACAAAGATCTGCAT 829 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || ||||| | ||| ||||| ||||| || ||||||| Sbjct 827 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 768 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| | ||||| || | ||| || || |||||||| |||||||| || ||| Sbjct 767 AACGTTCTACCGTCCTCAAGTTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGTGGA 708 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || ||||||||||| | ||| || || || || | || || | |||||| Sbjct 707 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTAC 649 >seq8964 Length=41004 Score = 111 bits (122), Expect = 4e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||| | |||| |||| || ||||| | ||||| || || || ||||||||||| | Sbjct 1610 CCACCTCTTAGTCGTAAG-ACAAGATGCAAGGTGCTCTCCTTCTGAATATTATAGTCAGA 1552 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| | |||||| ||||| ||||| || || | ||||||||| | || Sbjct 1551 AAGTGTTCTTCCATGTTCTAACTGTTTACCTGCAAATATAGGCCGCTGTTGATCAGGAGG 1492 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || || || || | ||| |||||||| || ||||| | ||| || Sbjct 1491 GATTCCTTCCTTGTCTTGAATCTTAGATTTTACGTTTTCAATGGAATCTGATGGTTCAAC 1432 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || || || || || | || || || | || ||||| Sbjct 1431 TTCCAGAGTTATTGTTTTACCAGTACGTGTTTTCACAATAATTTGCAT 1384 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 288270 ATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTG 288329 ||||| ||||||||||| || || || | | ||| || | | ||||||||| Sbjct 835 ATGAAGAGTGCTTTCTTTACAAATGTTGTAATTAGAGAGTGTTTTGTCATTTTCTAATTG 776 Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| ||||| ||||| || ||||||||| | || ||||||| ||| || || || || Sbjct 775 TTTACCTGCAAAGATAAGCCGCTGTTGATCAGGAGGAATTCCTTTTTTGTCTTGAATCTT 716 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 | ||| |||||||| || | ||| || ||| ||||| || | || || || || || Sbjct 715 AGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCCAGAGGTATTGTTTTACCAGT 656 Query 288450 CAGAGTCTTGACGAATATCTGCATT 288474 || || || || || || | |||| Sbjct 655 TAGTGTTTTCACAAAAATTTTCATT 631 >seq71731 Length=19556 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || ||||| | |||||||||||||||| |||||| ||||| Sbjct 4191 CCACCAGGTAGACGAAGCACAAGATGGAATGTGCTTTCTTTTTGGACATTATAATCGGCT 4132 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||| | | | | |||| ||| | || || | |||| || |||| Sbjct 4131 AATGTTTTGGTGTCATTCAGGTATCTTCCCGCGTAAATGAGCCTTTGTTCAGCCACTGGT 4072 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| |||| | ||||||| | || || | || || | ||| | |||| Sbjct 4071 ATCCCTTCCCTATCTTCGATTTTCCCCTTGACATCTTGTACTGTATCTTCGGGGCCTACC 4012 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | | ||||||||||||| || || | || |||||||||||| || Sbjct 4011 TCAATCTTGATCGTCTTCCCTGTAAGCATTTTCACGAATATCTGCGTT 3964 >seq120249 Length=1491 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || || ||||| | |||| ||||| ||||| || ||||| | | Sbjct 117 CCACCACGGAGTCGCAGGACCAGATGGAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 58 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTG 288356 || || | ||| ||||| | |||||| || || ||||| ||||||||||| Sbjct 57 AGGGTTCTTCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTG 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177650135102546