Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq60492 111 2e-19 seq9979 111 2e-19 seq112321 109 5e-19 >seq60492 Length=3139 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||||||| | || | |||||||||||| ||||| | | Sbjct 335 GACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCCTCGAGTTGCTTACCAGCA 276 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || |||||||| ||||| |||||| ||| | Sbjct 275 AAGATAAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACA 216 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | || ||||| | || | || || |||||||||||||| Sbjct 215 TTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTG 156 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 155 ACAAAGATCTGCAT 142 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||||||| | || | ||||||||||| ||||| | | Sbjct 1022 GACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCGAGTTGCTTACCAGCA 963 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||||||||| || || |||||||| ||||| |||||| ||| | Sbjct 962 AAGATGAGCCGCTGTTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACA 903 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | || ||||| | || | || || ||||| |||||||| Sbjct 902 TTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTG 843 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 842 ACAAAGATCTGCAT 829 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | ||||| || || |||||||||||| Sbjct 1511 CCACCACGGAGACGAAGAACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 1452 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | |||||||||||| ||||| | | |||| |||||||| || || || || Sbjct 1451 AACGTTCTTCCGTCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGA 1392 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| |||||| ||| | | || | |||||| | | || ||| Sbjct 1391 ATACCCTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACC 1332 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||||||||| ||||| |||||||| Sbjct 1331 TCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1285 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||||||| | || | ||||||||||| ||||| | | Sbjct 563 GACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCATCCTCGAGTTGCTTACCAGCA 504 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || |||||||| ||||| |||||| ||| | Sbjct 503 AAGATAAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACA 444 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | || ||||| | || | || || |||||||| ||||| Sbjct 443 TTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTG 384 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 383 ACAAAGATCTGCAT 370 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||| || || |||||||||||| | || | |||||| ||||||||||| | Sbjct 1252 TTGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCTAGTTGTTTACCAG 1193 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| ||||| || || || || || ||||| || ||||| |||||| ||| | Sbjct 1192 CGAAGATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGGATTTTGGATTTGA 1133 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||| | | || ||||| | || | || || ||||||||||||| Sbjct 1132 CATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTT 1073 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 1072 TGACAAAGATCTGCAT 1057 >seq9979 Length=2718 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||||||| | || | |||||| ||||||||||| | | Sbjct 2384 GACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCA 2443 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || |||||||| ||||| |||||| ||| | Sbjct 2444 AAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACA 2503 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | || || || | || | || || |||||||||||||| Sbjct 2504 TTCTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTG 2563 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 2564 ACAAAGATCTGCAT 2577 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||||||| | || | ||||||||| || || || | | Sbjct 1928 GACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGCTGCTTTCCAGCA 1987 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || |||||||| ||||| |||||| ||| | Sbjct 1988 AAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACA 2047 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | || ||||| | || | || || |||||||||||||| Sbjct 2048 TTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTG 2107 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 2108 ACAAAGATCTGCAT 2121 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||||||| | || | ||||||||||| || || | | Sbjct 2156 GACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCGAGTTGCTTTCCAGCA 2215 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || |||||||| ||||| |||||| ||| | Sbjct 2216 AAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACA 2275 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | || || |||| || | || || |||||||||||||| Sbjct 2276 TTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGTCAGAGTTTTG 2335 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 2336 ACAAAGATCTGCAT 2349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || | |||||||||||||||||| | Sbjct 2612 GACTCCTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCCTCGAGTTGTTTACCAGCG 2671 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 |||| |||||||| ||||| || || |||||||| ||||| Sbjct 2672 AAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTC 2712 >seq112321 Length=3025 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||||||| | || | |||||| ||||||||||| | Sbjct 2800 GACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCG 2741 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || |||||||| ||||| |||||| ||| | Sbjct 2740 AAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACA 2681 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | || || |||| || | || || |||||||| ||||| Sbjct 2680 TTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGTCAGTGTTTTG 2621 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 2620 ACAAAGATCTGCATG 2606 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 || || || |||||||||||| | || | |||||||||||||||||| | | Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGAAA 2966 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT 138543 || |||||||| ||||| || || |||||||| ||||| |||||| ||| | | Sbjct 2965 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTC 2906 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | |||||| | | || ||||| | || | || || |||||||||||||| ||| Sbjct 2905 TCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACA 2846 Query 138604 AAAATCTGCAT 138614 || |||||||| Sbjct 2845 AAGATCTGCAT 2835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495439801649040