Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq112321 132 3e-26 seq9979 129 4e-25 seq60492 120 2e-22 seq8964 86.0 4e-12 >seq112321 Length=3025 Score = 132 bits (146), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAAT--TCTCGCGTCTTCTAAT 15030 ||| || || || ||||| || |||||||| ||| || ||| ||| |||| |||| | Sbjct 2810 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG--GATAATGTTCTTCCGTCCTCTAGT 2753 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||| |||||| | || | |||||| ||||| |||||| ||||||||||| ||| Sbjct 2752 TGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATT 2693 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| | || || || || ||| |||||| || | ||| ||||| || || Sbjct 2692 TTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCA 2633 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||||| ||||| ||||| || ||||| || Sbjct 2632 GTCAGTGTTTTGACAAAGATCTGCATGTT 2604 Score = 123 bits (136), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGT 15043 ||||| || |||||||| ||| || ||| ||| |||| || | |||||| |||||| Sbjct 3025 TCTTTCTGGATGTTGTAGTCG--GATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGA 2968 Query 15044 ATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAA 15103 | || | |||||| ||||| |||||| ||||||||||| |||||| ||| ||| Sbjct 2967 AAATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACAT 2908 Query 15104 TTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15163 | || || || || || |||||| || | ||| ||||| || || ||||||||||| | Sbjct 2907 TCTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGA 2848 Query 15164 CAAAAATTTGCATA 15177 |||| || |||||| Sbjct 2847 CAAAGATCTGCATA 2834 >seq9979 Length=2718 Score = 129 bits (142), Expect = 4e-25 Identities = 154/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAAT--TCTCGCGTCTTCTAAT 15030 ||| || || || ||||| || |||||||| ||| || ||| ||| |||| |||| | Sbjct 2374 ATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCG--GATAATGTTCTTCCGTCCTCTAGT 2431 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||| ||||| | || | |||||| ||||| |||||| ||||||||||| ||| Sbjct 2432 TGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATT 2491 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| | || || || || || |||||| || | ||| ||||| || || Sbjct 2492 TTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGATGGTCTTGCCA 2551 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||||||| ||||| || |||||| Sbjct 2552 GTCAGAGTTTTGACAAAGATCTGCATA 2578 Score = 116 bits (128), Expect = 3e-21 Identities = 151/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAAT--TCTCGCGTCTTCTAAT 15030 ||| || || || ||||| || |||||||| ||| || ||| ||| | || || | | Sbjct 2146 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG--GATAATGTTCTTCCATCCTCGAGT 2203 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 || || ||||| | || | |||||| ||||| ||||| ||||||||||| ||| Sbjct 2204 TGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATT 2263 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| | || || || || ||| |||||| || | ||| ||||| || || Sbjct 2264 TTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCA 2323 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||||||| ||||| || |||||| Sbjct 2324 GTCAGAGTTTTGACAAAGATCTGCATA 2350 Score = 111 bits (122), Expect = 1e-19 Identities = 150/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTTCTAAT 15030 ||| || || || ||||| || |||||||| ||| || || |||| |||| || | Sbjct 1918 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG--GATAACGTTCTTCCGTCCTCGAGC 1975 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 || || ||||| | || | |||||| ||||| ||||| ||||||||||| ||| Sbjct 1976 TGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATT 2035 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| | || || || || || |||||| || | ||| ||||| || || Sbjct 2036 TTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCA 2095 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||||||| ||||| || |||||| Sbjct 2096 GTCAGAGTTTTGACAAAGATCTGCATA 2122 >seq60492 Length=3139 Score = 120 bits (132), Expect = 2e-22 Identities = 152/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTTCTAAT 15030 ||| || || || ||||| || |||||||| ||| || || |||| |||| |||| | Sbjct 1260 ATGGAGTGTTGACTCTTTCTGGATGTTGTAGTCG--GATAACGTTCTTCCGTCCTCTAGT 1203 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||| |||||| | || | ||| || || || |||||| || |||||||| ||| Sbjct 1202 TGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGGATT 1143 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| | || || || || || |||||| || | ||| ||||| || || Sbjct 1142 TTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCA 1083 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||||||| ||||| || |||||| Sbjct 1082 GTCAGAGTTTTGACAAAGATCTGCATA 1056 Score = 111 bits (122), Expect = 1e-19 Identities = 150/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTTCTAAT 15030 ||| || || || ||||| || |||||||| ||| || || | || |||| || | | Sbjct 345 ATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCG--GATAACGTCCTTCCGTCCTCGAGT 288 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 || || ||||| | || | |||||| || || |||||| ||||||||||| ||| Sbjct 287 TGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATT 228 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| | || || || || || |||||| || | ||| ||||| || || Sbjct 227 TTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCA 168 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||||||| ||||| || |||||| Sbjct 167 GTCAGAGTTTTGACAAAGATCTGCATA 141 Score = 111 bits (122), Expect = 1e-19 Identities = 150/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAAT--TCTCGCGTCTTCTAAT 15030 ||| || || || ||||| || |||||||| ||| || ||| ||| | || || | | Sbjct 1032 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG--GATAATGTTCTTCCATCCTCGAGT 975 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 || || ||||| | || | ||||||||||| |||||| ||||||||||| ||| Sbjct 974 TGCTTACCAGCAAAGATGAGCCGCTGTTGGTCTGGTGGAATACCTTCCTTGTCCTGGATT 915 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| | || || || || || |||||| || | ||| ||||| || || Sbjct 914 TTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCA 855 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||||||| ||||| || |||||| Sbjct 854 GTAAGAGTTTTGACAAAGATCTGCATA 828 Score = 109 bits (120), Expect = 4e-19 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCT 15024 ||| | ||| || || || ||||| || |||||||| ||| || || |||| |||| Sbjct 1494 AACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG--GATAACGTTCTTCCGTCC 1437 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| || ||||| | || | |||||| || || ||||| || |||||||| Sbjct 1436 TCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 1377 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| ||| ||| | || || || || || |||||| || | ||| ||||| Sbjct 1376 TGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTC 1317 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||||||||| ||||| || |||||| Sbjct 1316 TTGCCAGTCAGAGTTTTGACAAAGATCTGCATA 1284 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTTCTAAT 15030 ||| || || || ||||| || |||||||| ||| || || | || | || || | | Sbjct 573 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG--GATAACGTCCTTCCATCCTCGAGT 516 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 || || ||||| | || | |||||| || || ||||| ||||||||||| ||| Sbjct 515 TGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGGATT 456 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| | || || || || || |||||| || | ||| ||||| || || Sbjct 455 TTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCA 396 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| ||||| || |||||| Sbjct 395 GTCAGGGTTTTGACAAAGATCTGCATA 369 Score = 82.4 bits (90), Expect = 5e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTTCTAAT 15030 ||| || || || ||||| || |||||||| ||| || || |||| |||| || | | Sbjct 804 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG--GATAACGTTCTACCGTCCTCAAGT 747 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 || || |||||| | || | |||||| ||||| |||||| ||||||||||| ||| Sbjct 746 TGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATT 687 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| ||| ||| | || || || || || |||||| Sbjct 686 TTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTAC 649 >seq8964 Length=41004 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||| || |||||||| || ||||| |||||||||| ||| || | | | Sbjct 844 TAACACCAAATGAAGAGTGCTTTCTTTACAAATGTTGTAATTAGAGAGTGTTTTGTCATT 785 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 |||||||||||| || || | || | |||||||| || |||||||||| ||||| Sbjct 784 TTCTAATTGTTTACCTGCAAAGATAAGCCGCTGTTGATCAGGAGGAATTCCTTTTTTGTC 725 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTA-AGGTAATGG 15142 ||| || |||||| |||| || ||||| ||| || || | |||| || | Sbjct 724 TTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCCAGAGGT-ATTG 666 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| || || ||||| |||||||||| ||| Sbjct 665 TTTTACCAGTTAGTGTTTTCACAAAAATTTTCAT 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356814401700995