Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq60492 107 2e-18 seq9979 107 2e-18 seq112321 82.4 7e-11 >seq60492 Length=3139 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| | ||| | || ||||| ||||| ||| Sbjct 1253 GTTGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCTAGTTGTTTACCA 1194 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || |||||||| || || || |||||||||||| |||||| ||| Sbjct 1193 GCGAAGATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGGATTTTGGATTTG 1134 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | || || || | ||| | || ||||| ||||||||| Sbjct 1133 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTT 1074 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 1073 TTGACAAAGATCTGCAT 1057 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | || | ||| | || |||||||| || || ||||| ||| Sbjct 1512 TCCACCACGGAGACGAAGAACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 1453 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| | || || || || || ||||| |||| | ||||||||||| || || Sbjct 1452 TAACGTTCTTCCGTCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGG 1393 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| |||||| |||| | |||| |||||| | || || Sbjct 1392 AATACCCTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTAC 1333 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| ||||||||||| ||||| |||||||| Sbjct 1332 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1285 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| | ||| | || || || || || ||| Sbjct 338 GTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCCTCGAGTTGCTTACCA 279 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||||| || || || || ||||||||| |||||| ||| Sbjct 278 GCAAAGATAAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 219 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | || || || | ||| | || ||||| ||||||||| Sbjct 218 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTT 159 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 158 TTGACAAAGATCTGCAT 142 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| | ||| | ||| || || || || ||| Sbjct 566 GTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCATCCTCGAGTTGCTTACCA 507 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||||| || || || || ||||||||| |||||| ||| Sbjct 506 GCAAAGATAAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 447 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | || || || | ||| | || ||||| ||||| ||| Sbjct 446 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTT 387 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 386 TTGACAAAGATCTGCAT 370 >seq9979 Length=2718 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| | || | ||| || || || |||||| Sbjct 2153 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCGAGTTGCTTTCCA 2212 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || || || || || ||||||||| |||||| ||| Sbjct 2213 GCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 2272 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| || || ||||||| ||| | || ||||| ||||||||| Sbjct 2273 ACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGTCAGAGTT 2332 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 2333 TTGACAAAGATCTGCAT 2349 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | || | ||| | || |||||||| || || ||||| ||| Sbjct 1894 TCCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 1953 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| | || || ||||| |||||||| |||| | |||||||| || || || Sbjct 1954 TAACGTTCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 2013 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| |||||| |||| | |||| |||||| | || || Sbjct 2014 AATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTAC 2073 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| ||||||||||| ||||| |||||||| Sbjct 2074 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2121 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| | || | || ||||| ||||| ||| Sbjct 2381 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTGTTTACCA 2440 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || || || || || ||||||||| |||||| ||| Sbjct 2441 GCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 2500 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | || ||||| | ||| | || ||||| ||||||||| Sbjct 2501 ACATTCTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAGAGTT 2560 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 2561 TTGACAAAGATCTGCAT 2577 >seq112321 Length=3025 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || ||||| |||||| | || | |||||||| || || || || || |||||| Sbjct 2989 TCCTCGAGTTGTTTACCAGCGAAAATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTG 2930 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||| |||| | || | |||||| | || || || | ||| | Sbjct 2929 TCCTGGATTTTGGATTTGACATTCTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATG 2870 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||||||||| ||||| |||||||| Sbjct 2869 GTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474712615817680