Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9979 116 4e-21 seq112321 111 2e-19 seq60492 111 2e-19 >seq9979 Length=2718 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||| || ||||| ||||||||||||| || | |||| ||| Sbjct 1913 ACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCG 1972 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || || | ||||||||||| | || | | ||||||||| | Sbjct 1973 AGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGG 2032 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || |||| || | | ||||| || | ||| || || | |||||||| ||| Sbjct 2033 ATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTG 2092 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| |||||||| ||||| Sbjct 2093 CCAGTCAGAGTTTTGACAAAGATCTGCAT 2121 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||| || ||||| ||||||||||||| || | | || ||| Sbjct 2141 ACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCG 2200 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || || | ||||||||||| | || | | ||||||||| | Sbjct 2201 AGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGG 2260 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || |||| || | | ||||| || | ||| || || | |||||||| ||| Sbjct 2261 ATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTG 2320 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| |||||||| ||||| Sbjct 2321 CCAGTCAGAGTTTTGACAAAGATCTGCAT 2349 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||||||| || | |||| || || || || || || || Sbjct 2386 CTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCAAA 2445 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| ||| || |||| | Sbjct 2446 GATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATT 2505 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | ||| || || | |||||||| ||||| ||||| ||||| || Sbjct 2506 CTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGAC 2565 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 2566 AAAGATCTGCAT 2577 >seq112321 Length=3025 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||| || ||||| ||||||||||||| || | |||| || Sbjct 2815 ACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCT 2756 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || || || || ||||| || | ||||||||||| | || | | ||||||||| | Sbjct 2755 AGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGG 2696 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || |||| || | | ||||| || | ||| || || | |||||||| ||| Sbjct 2695 ATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTG 2636 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 || ||||| ||||| |||||||| ||||| |||| Sbjct 2635 CCAGTCAGTGTTTTGACAAAGATCTGCATGTTGC 2602 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| ||||||||||||| || | |||| ||||| || || || ||||| Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGAAA 2966 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | | ||||||||| ||| || |||| || Sbjct 2965 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTC 2906 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || | ||| || || | |||||||| ||||| ||||| ||||| ||| Sbjct 2905 TCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACA 2846 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 2845 AAGATCTGCAT 2835 >seq60492 Length=3139 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||| || ||||| ||||||||||||| || | |||| ||| Sbjct 1493 ACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCG 1434 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || || | |||||||| || | || | | |||||||||| | Sbjct 1433 AGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 1374 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || |||| || | | ||||| || | ||| || || | |||||||| ||| Sbjct 1373 ATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTG 1314 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| |||||||| ||||| Sbjct 1313 CCAGTCAGAGTTTTGACAAAGATCTGCAT 1285 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||||||| || | |||| ||||| ||||| || || || Sbjct 333 CTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCCTCGAGTTGCTTACCAGCAAA 274 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | ||||||||| ||| || |||| | Sbjct 273 GATAAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATT 214 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | ||| || || | |||||||| ||||| ||||| ||||| || Sbjct 213 CTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGAC 154 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 153 AAAGATCTGCAT 142 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||| || ||||| ||||||||||||| || | | || ||| Sbjct 578 ACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCATCCTCG 519 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || || | |||||||| || | || | | ||||||||| | Sbjct 518 AGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGG 459 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || |||| || | | ||||| || | ||| || || | |||||||| ||| Sbjct 458 ATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTG 399 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| |||||||| ||||| Sbjct 398 CCAGTCAGGGTTTTGACAAAGATCTGCAT 370 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||| || ||||| ||||||||||||| || | |||| || Sbjct 1265 ACAAGATGGAGTGTTGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCT 1206 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || || || || ||||| || | || ||||| || | || | | |||||||||| | Sbjct 1205 AGTTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGG 1146 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || |||| || | | ||||| || | ||| || || | |||||||| ||| Sbjct 1145 ATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTG 1086 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| |||||||| ||||| Sbjct 1085 CCAGTCAGAGTTTTGACAAAGATCTGCAT 1057 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||| || ||||| ||||||||||||| || | | || ||| Sbjct 1037 ACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCG 978 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || || | ||||| ||||| | || | | ||||||||| | Sbjct 977 AGTTGCTTACCAGCAAAGATGAGCCGCTGTTGGTCTGGTGGAATACCTTCCTTGTCCTGG 918 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || |||| || | | ||||| || | ||| || || | |||||||| ||| Sbjct 917 ATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTG 858 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| |||||||| ||||| Sbjct 857 CCAGTAAGAGTTTTGACAAAGATCTGCAT 829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564301467893640