Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq33510 140 3e-28 seq112321 98.7 1e-15 seq60492 87.8 2e-12 seq37278 87.8 2e-12 seq9979 87.8 2e-12 >seq33510 Length=29102 Score = 140 bits (154), Expect = 3e-28 Identities = 167/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| |||||| |||||||| ||| ||| || | ||| ||||| | || ||||| | Sbjct 26571 CCTCATCCCTGCTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 26630 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| || || || || || ||||| || |||| ||||||||| || || || | Sbjct 26631 TGAGCCAGAAGATTGCAGCAAATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGG 26690 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | |||| ||| |||| | || ||||| ||||| | ||||||| ||||||||| |||| Sbjct 26691 CTACCACGCGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCGG 26750 Query 133097 CCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 |||| |||||| || || || ||||||||||| || || || Sbjct 26751 CCTTCTTCTTTACAGCT-GGTATGGTTTCGATGGCATTGAATAA 26793 >seq112321 Length=3025 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| || || ||||| ||||||||| |||| || || | Sbjct 2604 AACATGCAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTCGAAGTAGAACCT 2663 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | ||| ||||||| ||||| || || ||||| | ||| Sbjct 2664 AGTGACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGAC 2723 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | ||| || ||||| || || |||| | || | ||||||| Sbjct 2724 CAGCAGCGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTAC 2783 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| || || | || || ||| | || || ||| Sbjct 2784 AACATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGT 2822 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || || || | | Sbjct 2835 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 2894 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| ||||||| ||||| || || ||||| | ||||| Sbjct 2895 GACACCATTGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 2954 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||| || ||||| || || |||| | || | |||||||||| Sbjct 2955 CAGCGTCTCATTTTCGCTGGTAAACAACTCGAGGACGGAAGAACATTATCCGACTACAAC 3014 Query 38424 ATCCAAAAGGA 38434 ||||| || || Sbjct 3015 ATCCAGAAAGA 3025 >seq60492 Length=3139 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || || || | | Sbjct 829 ATGCAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 888 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| ||||||| ||||| || || ||||| | |||||| Sbjct 889 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAA 948 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||||||||| | || || || || || || || | | || | |||||||||| Sbjct 949 CAGCGGCTCATCTTTGCTGGTAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAAC 1008 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || || | || || ||| | || || ||| Sbjct 1009 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGT 1044 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || || || | | Sbjct 1057 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 1116 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| ||||||| ||||| ||||| ||||| | || || Sbjct 1117 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAGGGTATTCCACCAGATCAG 1176 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| || ||||| || || |||| | || | |||||||||| Sbjct 1177 CAACGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACGTTATCCGACTACAAC 1236 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || || | || || ||| | || || ||| Sbjct 1237 ATCCAGAAAGAGTCAACACTCCATCTTGTCCTTCGT 1272 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || || || | | Sbjct 1285 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 1344 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| ||||||| ||||| ||||| |||||| | || || Sbjct 1345 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 1404 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || || || || |||| | || | |||||||||| Sbjct 1405 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGACGGAAGAACGTTATCCGACTACAAC 1464 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || || | || || ||| | || || ||| Sbjct 1465 ATCCAGAAAGAGTCCACACTCCATCTTGTTCTTCGT 1500 >seq37278 Length=37914 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268 |||||| || || ||||||||||||||||| | || || ||||| ||||| ||| Sbjct 4978 CTCCATAGCTATCTGAAAGCCGTAAAAGCATCTAGCTTCCGTAACCTGAACTTCCTGACT 4919 Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328 || | ||| ||||| ||||| |||||||| || |||||||| || || || || || | Sbjct 4918 AAATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAAT 4859 Query 133329 GTGCTTGATGAAATGG 133344 ||| ||||| ||| Sbjct 4858 GTGAGATATGAAGTGG 4843 >seq9979 Length=2718 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || || || | | Sbjct 2121 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 2062 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| ||||||| ||||| || || |||||| | ||||| Sbjct 2061 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 2002 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || ||||| || |||| | || | |||||||||| Sbjct 2001 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAAC 1942 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || || | || || ||| | || || ||| Sbjct 1941 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGT 1906 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || || || | | Sbjct 2577 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCAAGT 2518 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| ||||||| ||||| || || ||||| | ||||| Sbjct 2517 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 2458 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || || ||||| || || |||| | || | |||||||||| Sbjct 2457 CAGCGTCTCATCTTTGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTACAAC 2398 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || || | || || ||| | || || ||| Sbjct 2397 ATCCAGAAAGAGTCCACTCTCCATCTTGTCCTTCGT 2362 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| |||| || || | | Sbjct 2349 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTCGAAGTAGAACCTAGT 2290 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| ||||||| ||||| || || |||||| | ||||| Sbjct 2289 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 2230 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || || || || || | | || | |||||||||| Sbjct 2229 CAGCGTCTTATCTTTGCTGGAAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAAC 2170 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || || | || || ||| | || || ||| Sbjct 2169 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGT 2134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499343719818880