Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq22802 111 2e-19 seq73127 91.5 2e-13 seq33510 86.0 7e-12 >seq22802 Length=4402 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||||| ||| |||||||| | |||| | ||| || || || | ||||| ||| Sbjct 3777 GTGTACTCTACAATCTCTGTACAGAGGTTGCTGCACTTGATTGTACCAAGGTTCTTCTGG 3836 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| |||| || |||||||||||||||||||| ||||| || |||||||| ||| Sbjct 3837 TTGCTCTTCCTGTTACAAGCATCCTTGTAGAGCATGTAAGGCGTTCCAGTCTCCGTTTGT 3896 Query 106625 G 106625 | Sbjct 3897 G 3897 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | ||||| || || | | ||||||| || |||| ||| || || |||||| Sbjct 1081 TAGATGTTACTGGTGTACGGCTCTATGGATTCATTGTTTCCCAGGATCTGGGCCGTGGAG 1140 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC 106035 |||||||||||||| || | || ||||||||||| || || Sbjct 1141 GCTGTTGGCATTGGGGCTAACAGGAGACTGTTACGCAGGCC 1181 >seq73127 Length=3785 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 105908 AACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCA 105967 || ||||||| || |||||| |||||||| | ||||| || || | | ||||| Sbjct 2486 AATTCTCCCGAAAGAACTCTTCTGGTGTAGATGTTACTGGTGTACGGCTCTATGGATTCA 2545 Query 105968 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 106027 || || |||| ||| || || |||||||||||||||||||| || | || ||||||||| Sbjct 2546 TTGTTTCCCAGGATCTGGGCCGTGGAGGCTGTTGGCATTGGGGCTAACAGGAGACTGTTA 2605 Query 106028 CGAAGACC 106035 || || || Sbjct 2606 CGCAGGCC 2613 >seq33510 Length=29102 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | || |||||||| ||||| ||||||||||| | || || |||| Sbjct 26571 CCTCATCCCTGCTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 26630 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 | | ||| | || || ||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 26631 TGAGCCAGAAGATTGCAGCA-AATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAG 26689 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTGCCCATTT 117470 || | | ||| ||| | | | | ||||||| ||| | ||| |||| ||||| | Sbjct 26690 GCTACCACGCGTTCGCTGTACCTG-GCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTC 26748 Query 117471 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTG 117518 |||||||||| | | ||||| |||| |||||| | ||||| || Sbjct 26749 GGCCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCATTGAATAATTG 26796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589002855200680