Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9979 102 5e-17 seq60492 93.3 3e-14 seq112321 87.8 1e-12 >seq9979 Length=2718 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || | ||| | |||| || || || ||||| ||||| Sbjct 2159 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCGAGTTGCTTTCCAGCAAAG 2218 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | || |||||||| || || |||||| || Sbjct 2219 ATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTTGAC--AT 2276 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | || || |||| ||| ||||| || || || ||||| || | Sbjct 2277 TCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGTCAGAGTTTTGA 2336 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 2337 CAAAGATCTGCATA 2350 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || | ||| | | || || ||||| ||||| ||||| Sbjct 1931 TCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGCTGCTTTCCAGCAAAG 1990 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | || |||||||| || || |||||| || Sbjct 1991 ATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTTGAC--AT 2048 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | || || || | ||| ||||| || || || ||||| || | Sbjct 2049 TCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGA 2108 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 2109 CAAAGATCTGCATA 2122 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || | ||| | | || || || ||||| || ||||| Sbjct 2387 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCAAAG 2446 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | || |||||||| || || |||||| || Sbjct 2447 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGAC--AT 2504 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | || || || | ||| ||||| || || || ||||| || | Sbjct 2505 TCTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGA 2564 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 2565 CAAAGATCTGCATA 2578 >seq60492 Length=3139 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || | ||| | | || || || ||||| || || || Sbjct 1247 TCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAG 1188 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||| ||| | || | ||||||||||| || || |||||| || Sbjct 1187 ATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGGATTTTGGATTTGAC--AT 1130 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | || || || | ||| ||||| || || || ||||| || | Sbjct 1129 TCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGA 1070 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 1069 CAAAGATCTGCATA 1056 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || | ||| | |||| || || || || || ||||| Sbjct 1019 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCGAGTTGCTTACCAGCAAAG 960 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || |||||| | || | || |||||||| || || |||||| || Sbjct 959 ATGAGCCGCTGTTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGAC--AT 902 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | || || || | ||| ||||| || || || ||||| || | Sbjct 901 TCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTGA 842 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 841 CAAAGATCTGCATA 828 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || | ||| | | || || || || || || ||||| Sbjct 1475 TCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGTTGCTTACCAGCAAAG 1416 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| || || |||||| || Sbjct 1415 ATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATTTTGGATTTGAC--AT 1358 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | || || || | ||| ||||| || || || ||||| || | Sbjct 1357 TCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGA 1298 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 1297 CAAAGATCTGCATA 1284 >seq112321 Length=3025 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || | ||| | | || || || ||||| || || || Sbjct 2797 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAG 2738 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | || |||||||| || || |||||| || Sbjct 2737 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGAC--AT 2680 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | || || |||| ||| ||||| || || || || || || | Sbjct 2679 TCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGTCAGTGTTTTGA 2620 Query 34969 CAAAGATCTGCATATT 34984 ||||||||||||| || Sbjct 2619 CAAAGATCTGCATGTT 2604 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || | ||| | | || || || ||||| || || || Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGAAA 2966 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | || |||||||| || || |||||| || Sbjct 2965 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGAC--AT 2908 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | || || || | ||| ||||| || || || ||||| || | Sbjct 2907 TCTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGA 2848 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 2847 CAAAGATCTGCATA 2834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324108944117496