Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq33510 113 5e-20 >seq33510 Length=29102 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || || || || | |||||| || ||||| | || ||||| | ||| | ||| | Sbjct 26571 CCTCATCCCTGCTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 26630 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || | |||||||||||| || || || || || || || || ||||| | Sbjct 26631 TGAGCCAGAAGATTGCAGCAAATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGG 26690 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | || | | ||| | || || || | || | | ||||| ||||| ||||| || | Sbjct 26691 CTACCACGCGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCGG 26750 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 ||||||| |||||| ||| || || || || | ||| |||| Sbjct 26751 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCATTGAATA 26792 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 |||||| || | ||||| || || | |||||||||||||||||| ||||||||||| || Sbjct 27072 TGTATCCTTGATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGAT 27131 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || ||||| |||||||| || || || || |||| | ||| || || Sbjct 27132 TGCAATCTGGAATCCGTAGAAGCACCTAGCCTCTGATGCCTGAACCTC 27179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561177055479480