Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq37278 89.7 6e-13 seq33510 87.8 2e-12 >seq37278 Length=37914 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 37253 TTTTTTAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGC 37312 |||||| | ||||||||| ||||| ||||| ||||| |||||||| || || |||| ||| Sbjct 6738 TTTTTTCAACCAAAATATGGCTGCGAAAGACCCAGAGAAGAAAATGCCCTCCACTGATGC 6679 Query 37313 AAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCA 37372 ||||||||| || | | |||| | || || |||||||| || || ||| Sbjct 6678 AAATGCTACTAGCCTCTCAGCGAATGATGCCTCGGAACTTGAAATCCACTTCAATGCCCA 6619 Query 37373 ATCTGCCTTTAATTTAACACAT 37394 ||||||||| ||| |||||| Sbjct 6618 GTCTGCCTTTTTTTTGACACAT 6597 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 37491 TCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAA 37550 || |||||||||||||| || ||||| || |||||||| | | ||||| || | | | Sbjct 4977 TCCATAGCTATCTGAAAGCCGTAAAAGCATCTAGCTTCCGTAACCTGAACTTCCTGACTA 4918 Query 37551 AACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAA 37608 || |||| | | ||||||||| || || ||||| || || ||||||||||| |||| Sbjct 4917 AATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAA 4860 >seq33510 Length=29102 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 37438 TATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAG 37497 |||| | ||||| || || || |||||||| |||||||| |||||||||||||| || | Sbjct 27074 TATCCTTGATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTG 27133 Query 37498 CTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543 | ||||| || || || || |||||||| || ||| ||||| || Sbjct 27134 CAATCTGGAATCCGTAGAAGCACCTAGCCTCTGATGCCTGAACCTC 27179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591334983076280