Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq45117 136 3e-27 seq8964 129 5e-25 seq48055 120 2e-22 >seq45117 Length=16876 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 ||||| || |||||||| || ||| || |||||||||| | || |||||| || Sbjct 6269 CGTAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGAAATTGTTCTGTCA 6210 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || || || |||||| |||||| | ||||||||||| || ||||| |||||||| Sbjct 6209 TCTTCTAACTGTCTACCTGTAAATATAAGCCGCTGTTGATCCGGAGGAATTCCTTCTTTG 6150 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 |||||||| || |||||| |||| | || || |||| ||| |||||||||| | Sbjct 6149 TCTTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCAAGAGATATT 6090 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || | ||||| || || || ||||| Sbjct 6089 GTTTTACCAGTAAGTGTTTTCACTAAAATTTGCAT 6055 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 ||||| || |||||||| || ||| || |||||||||| | | |||||| || Sbjct 6953 CGTAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGAAAGTGTTCTGTCA 6894 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || || || ||||||||||||| | | ||||||||| || ||||| |||||||| Sbjct 6893 TCTTCTAAATGTCTACCTGCAAATATAAGCCCCTGTTGATCCGGAGGAATTCCTTCTTTG 6834 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 |||||||| || |||||| |||| | || || |||| || ||||| |||| | Sbjct 6833 TCTTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTGAACTTCCAGAGATATT 6774 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| | || || | ||||| || | || ||||| Sbjct 6773 GTTCTACCAGTAAGTGTTTTCACTACAATTTGCAT 6739 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||| |||| |||| || || |||| || || || ||||||||||| | Sbjct 7878 CCTCCTTTTAACAGTAACACCAACTGAACAGTGCTCTCCTTACAAATATTGTAATCAGAA 7819 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || || || ||||||||||| || | | ||||||||| || ||| Sbjct 7818 AGTGTTCTTCCATCTTCTAACTGTTTACCTGCAAAGATAAGCCTCTGTTGATCAGGAGGA 7759 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||| | |||| ||| | ||||||| |||| | || || |||| ||| ||| Sbjct 7758 ATTCCTTCTCTGTCTTCAATCATAGCTTTTACATTTTCAATGGTATCTGACGGTTCAACT 7699 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | ||||| || || | ||||| | || || ||||| Sbjct 7698 TCCAGGGATATTGTTTTACCAGTAATTGTTTTCTCTAAAATTTGCAT 7652 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 101245 TCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGAT 101304 |||||| | ||||| | |||||| | || ||| || |||||||||| | | Sbjct 7648 TCCTCTAAGCCGTAACTCCAAATGAGGAGTGCTTTCATTACTAATATTGTAATTAGAAAG 7589 Query 101305 AGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAAT 101364 |||||| |||| | || || ||||||||||| | | ||||||| ||| | | ||| Sbjct 7588 TGTTCTGTCATCTTATAACTGTTTACCTGCAAAGAGAAGCCGCTGTTCATCAGAAGAAAT 7529 Query 101365 GCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTC 101424 |||||||| |||||||| || ||||||| |||| | || || |||| ||| ||||| Sbjct 7528 TCCTTCTTTGTCTTGAATCTTAGATTTTACATTTTCAATGGTATCTGACGGTTCAACTTC 7469 Query 101425 AAGAGTGACCGTTT-TGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||| | || || | |||| || || || ||||| Sbjct 7468 AAAAGAAATTGTTTGTACCAGTAATTGTTTCCACTAAAATTTGCAT 7423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 101288 ATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGC 101347 ||||||||||| | | | | | ||| || || | ||||||||||| || | ||| Sbjct 7376 ATATTGTAATCAGAAAGGGATTTTTTATCTTCTAACTCTTTACCTGCAAAGATAAGCCGC 7317 Query 101348 TGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTG 101407 ||||||| || ||||| |||||||| |||||||| || |||||| |||| | || Sbjct 7316 TGTTGATTAGGAGGAATTCCTTCTTTGTCTTGAATCTTAGATTTTACGTTTTCAATGGTA 7257 Query 101408 TCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGC 101467 || || | || |||||||||| | ||||| || || || ||||| || | || ||| Sbjct 7256 TCTGATGGTTGAACTTCAAGAGATATTGTTTTACCAGTAAATGTTTTCACTACAATTTGC 7197 Query 101468 AT 101469 || Sbjct 7196 AT 7195 >seq8964 Length=41004 Score = 129 bits (142), Expect = 5e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 101256 GTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCAT 101315 |||| || |||||||| || |||||| || ||||||| | || ||| || ||| Sbjct 845 GTAACACCAAATGAAGAGTGCTTTCTTTACAAATGTTGTAATTAGAGAGTGTTTTGTCAT 786 Query 101316 CGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTAT 101375 || ||||| ||||||||||| || | ||||||||||| || ||||| |||| ||| | Sbjct 785 TTTCTAATTGTTTACCTGCAAAGATAAGCCGCTGTTGATCAGGAGGAATTCCTTTTTTGT 726 Query 101376 CTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCG 101435 ||||||| || |||||| |||| | || || |||| ||| ||||| |||| | | Sbjct 725 CTTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCCAGAGGTATTG 666 Query 101436 TTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| || |||| ||||| ||||| || | ||| Sbjct 665 TTTTACCAGTTAGTGTTTTCACAAAAATTTTCAT 632 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||| ||| || |||||| |||||||||| | | ||| || |||| || Sbjct 1068 ACCAAATAAAGAGTGCTTTCTTTACAAATATTGTAATTAGAAAGTGTTTTGTCATCTTCT 1009 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || || ||||||||||| || ||| |||||||||| || ||||| ||||||| |||||| Sbjct 1008 AACTGTTTACCTGCAAAGATAAAAAGCTGTTGATCAGGAGGAATTCCTTCTTCGTCTTGA 949 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || |||||| |||| | || || |||| ||| ||||| |||| | ||||| Sbjct 948 ATCTTAAATTTTACGTTTTCAATTGTATCTGACGGTTCAACTTCCAGAGATATTGTTTTA 889 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | | | ||||| || || || ||||| Sbjct 888 TCACTAAGTGTTTTCACTAAAATTTGCAT 860 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||| ||||| || | ||| | ||| || || || ||||| || || | Sbjct 1610 CCACCTCTTAGTCGTAAGACAAGATGCAAGGTGCTCTCCTTCTGAATATTATAGTCAGAA 1551 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| ||| || || || |||||||||||||| ||||||||||| || || Sbjct 1550 AGTGTTCTTCCATGTTCTAACTGTTTACCTGCAAATATAGGCCGCTGTTGATCAGGAGGG 1491 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||||||| || |||||| |||| | | || || | ||| ||| Sbjct 1490 ATTCCTTCCTTGTCTTGAATCTTAGATTTTACGTTTTCAATGGAATCTGATGGTTCAACT 1431 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | ||||| || || ||||| |||| || ||||| Sbjct 1430 TCCAGAGTTATTGTTTTACCAGTACGTGTTTTCACAATAATTTGCAT 1384 >seq48055 Length=12036 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 101256 GTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCAT 101315 |||| || | ||| || || || || |||| ||| || || | | ||||| ||| Sbjct 1287 GTAAGACAAGATGCAGAGTGCTCTCGTTCTGTACATTATAGTCAGACAGTGTTCTTTCAT 1346 Query 101316 CGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTAT 101375 | || || || ||||||||||| || | | ||||||||| || ||||| ||||| |||| Sbjct 1347 CTTCTAACTGATTACCTGCAAAAATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTAT 1406 Query 101376 CTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCG 101435 |||| |||||| |||||| | || | || || |||| | | ||||| ||||| | | Sbjct 1407 CTTGGATTTTTGATTTTACGTTATCAATGGTTTCCGACGGTACAACTTCCAGAGTTATTG 1466 Query 101436 TTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| || || | |||||| | |||||| ||||| Sbjct 1467 TTTTACCAGTAAGAGTTTTCATAAATATTTGCAT 1500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395637955530699