Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq45117 104 2e-17 seq8964 98.7 8e-16 seq50389 95.1 9e-15 >seq45117 Length=16876 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48550 GCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGAT 48609 |||| ||||||||||| || ||||| || || ||||||||||| ||| | ||| | Sbjct 6271 GCCGTAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGAAATTGTTCTGT 6212 Query 48610 CGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCT 48669 | || || ||||| |||| | |||||| || ||||||||||||| |||| || || | Sbjct 6211 CATCTTCTAACTGTCTACCTGTAAATATAAGCCGCTGTTGATCCGGAGGAATTCCTTCTT 6152 Query 48670 TGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAA 48729 |||| |||||| |||||| | | | ||||||| || || || | | | Sbjct 6151 TGTCTTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCAAGAGATA 6092 Query 48730 TCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | ||||| || || | ||||| || ||||| ||||| Sbjct 6091 TTGTTTTACCAGTAAGTGTTTTCACTAAAATTTGCAT 6055 Score = 95.1 bits (104), Expect = 9e-15 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 48550 GCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGAT 48609 |||| ||||||||||| || ||||| || || ||||||||||| ||| || ||| | Sbjct 6955 GCCGTAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGAAAGTGTTCTGT 6896 Query 48610 CGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCT 48669 | || || || || |||| |||||||| || | ||||||||||| |||| || || | Sbjct 6895 CATCTTCTAAATGTCTACCTGCAAATATAAGCCCCTGTTGATCCGGAGGAATTCCTTCTT 6836 Query 48670 TGTCGCTAATCTTTTGTTTTAC 48691 |||| |||||| |||||| Sbjct 6835 TGTCTTGAATCTTAGATTTTAC 6814 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 48547 TTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTC 48606 ||| | | |||||||| || | |||||||| || ||||||||||||||| || ||| Sbjct 7871 TTAACAGTAACACCAACTGAACAGTGCTCTCCTTACAAATATTGTAATCAGAAAGTGTTC 7812 Query 48607 GATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCT 48666 | || || ||||| ||||| ||||| || || | ||||||||| | |||| || | Sbjct 7811 TTCCATCTTCTAACTGTTTACCTGCAAAGATAAGCCTCTGTTGATCAGGAGGAATTCCTT 7752 Query 48667 CCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCG 48726 | |||| |||| | ||||||| | | | ||||||| || || |||| | Sbjct 7751 CTCTGTCTTCAATCATAGCTTTTACATTTTCAATGGTATCTGACGGTTCAACTTCCAGGG 7692 Query 48727 TAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||||| | ||||| ||||| Sbjct 7691 ATATTGTTTTACCAGTAATTGTTTTCTCTAAAATTTGCAT 7652 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48550 GCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGAT 48609 |||| ||||||||||| || ||||| || || ||||||||||||||| || |||| | Sbjct 6043 GCCGTAACACCAAATGAAGAGTGCTTTCATTAGAAATATTGTAATCAGAAAGTCTTCTTT 5984 Query 48610 CGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCT 48669 | || || |||| || | ||||| || || | ||| ||||| | ||| || || | Sbjct 5983 CATCTTCTAACTTTTTGTCTGCAAAGATAAGCCTCTGGTGATCAGGAAGAATTCCTTCTT 5924 Query 48670 TGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAA 48729 |||| |||| | | ||||||| | | || ||||| | ||| || | | | | | Sbjct 5923 TGTCTTGAATCATGTATTTTACATCTTCAATAGTATCTGAAGGCTCAACTTTGAGCTTTA 5864 Query 48730 TCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | ||| | | ||| ||| | |||||||| | ||| Sbjct 5863 TTGTTCTATCAACCAATGTTCTCACAAAAATATCCAT 5827 Score = 82.4 bits (90), Expect = 6e-11 Identities = 154/225 (68%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 48543 CCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA 48602 || || ||||| ||| ||||||| | ||||| || || ||||||||||| ||| || Sbjct 7647 CCTCTAAGCCGTAACTCCAAATGAGGAGTGCTTTCATTACTAATATTGTAATTAGAAAGT 7588 Query 48603 CTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACG 48662 ||| || || | ||||| ||||| ||||| | || ||||||| ||| | | || Sbjct 7587 GTTCTGTCATCTTATAACTGTTTACCTGCAAAGAGAAGCCGCTGTTCATCAGAAGAAATT 7528 Query 48663 CCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCC 48722 || || ||||| |||||| ||||||| | | | ||||||| || || || Sbjct 7527 CCTTCTTTGTCTTGAATCTTAGATTTTACATTTTCAATGGTATCTGACGGTTCAACTTCA 7468 Query 48723 ACCGTAATCGTTT-TTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | | ||| |||| | || || | |||| || ||||| ||||| Sbjct 7467 AAAGAAATTGTTTGTACCAGTAATTGTTTCCACTAAAATTTGCAT 7423 >seq8964 Length=41004 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || ||||| || || || | ||| | |||||||| || |||||||| || ||||| Sbjct 1610 CCACCTCTTAGTCGTAAGACAAGATGCAAGGTGCTCTCCTTCTGAATATTATAGTCAGAA 1551 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | | || ||||| ||||| |||||||| | ||||||||||| | || Sbjct 1550 AGTGTTCTTCCATGTTCTAACTGTTTACCTGCAAATATAGGCCGCTGTTGATCAGGAGGG 1491 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| |||||| | | || ||||| | || || Sbjct 1490 ATTCCTTCCTTGTCTTGAATCTTAGATTTTACGTTTTCAATGGAATCTGATGGTTCAACT 1431 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || || ||||| |||| ||| ||||| Sbjct 1430 TCCAGAGTTATTGTTTTACCAGTACGTGTTTTCACAATAATTTGCAT 1384 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 ||||||||||| || ||||| ||||| ||| ||||||| ||| || || || | Sbjct 843 AACACCAAATGAAGAGTGCTTTCTTTACAAATGTTGTAATTAGAGAGTGTTTTGTCATTT 784 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || ||||| ||||| || || ||||||||||| | |||| || | ||||| Sbjct 783 TCTAATTGTTTACCTGCAAAGATAAGCCGCTGTTGATCAGGAGGAATTCCTTTTTTGTCT 724 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 |||||| |||||| | | | ||||||| || || |||| | || ||| Sbjct 723 TGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCCAGAGGTATTGTT 664 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | ||||| |||||||| | ||| Sbjct 663 TTACCAGTTAGTGTTTTCACAAAAATTTTCAT 632 >seq50389 Length=23789 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 ||||||||||| || ||||| |||| ||||||| ||| ||| || ||| || || Sbjct 10913 AACACCAAATGAAGAGTGCTTTCTTGACAAATATTGCAATTAGAAAGTGTTCTGTCATCT 10972 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 |||||||| |||| ||||| || | |||||||| || | |||| || || ||||| Sbjct 10973 TCCAACTGTTTACTTGCAAAGATACGCCGCTGTTGGTCAGGAGGAATTCCTTCTTTGTCT 11032 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 |||||| ||||||| | | || ||||| | || || | || | || ||| Sbjct 11033 TGAATCTTAGATTTTACATCTTCAATAGTATCTGATGGTTCAACTTTCAGAGATATTGTT 11092 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | ||||| || ||||| ||||| Sbjct 11093 TTACCAGTAAGTGTTTTCACTAAAATGTGCAT 11124 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| ||||||||||| | |||||||| || ||||||||||| | |||| || | Sbjct 10465 AGCCGTAACACCAAATGAACAGTGCTCTCCTTACAAATATTGTAATTAAATAGTGTTTGT 10524 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 || | || ||||| ||||| ||||| || || ||||||||||| | |||| | || Sbjct 10525 TCATTTTCTAACTGTTTACCTGCAAAGATAAGCCGCTGTTGATCAGGGGGATTTCTTTCT 10584 Query 48669 TTGTCGCTAATCTTTTGTTTTAC 48691 ||||| ||||| | |||||| Sbjct 10585 TTGTCTTTAATCATAGCTTTTAC 10607 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 48543 CCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA 48602 || || ||||| |||||||| || | ||||||||| | |||||||||| ||| || Sbjct 10672 CCACTGAGCCGTAACACCAACTGAACCGTGCTCTCCTCACAAATATTGTAAGTAGAAAGT 10731 Query 48603 CTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACG 48662 ||| || || || ||||||||||| ||||| || | ||||||||||| | |||| Sbjct 10732 GTTCTGTCATCTTCTAACTGCTTACCTGCAAAGATAGGCCGCTGTTGATCAGGAGGAATT 10791 Query 48663 CCCTCCTTGTC 48673 || || ||||| Sbjct 10792 CCTTCGTTGTC 10802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380321948531061