Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq73127 86.0 1e-11 seq22802 86.0 1e-11 >seq73127 Length=3785 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTG-GCCAGCTC 213199 |||| ||| ||| ||||| | ||| | ||||| |||| || ||| |||| ||| Sbjct 3269 CCTTGGCTTGTGGGACTGCCTTCGTAGGTCTTATAGGGTCCAT-CTTGTTGTGCCAACTC 3327 Query 213200 GCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTT 213259 ||| | | |||||||| ||||||||||||||||| ||||| | ||||| |||| Sbjct 3328 ACAGCTTGTTTCGAGGGCAGCATAGTAGATGGTTTCAAAGATCTCAATATTGAGTTTCTG 3387 Query 213260 GGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGAC 213319 ||| ||||| | || || | | ||||| | ||| | || || ||||| || || Sbjct 3388 GGCTTCTGGACTCTCAAATGGAAACCTCATGAGGATGAAAGCGTCGGCTAGCCCTTGAAC 3447 Query 213320 CCCGATGCCGATGGGTCTGTGTCTCAGGTTAGAC 213353 ||||| |||||||| | || |||| || ||| Sbjct 3448 TCCGATTCCGATGGGACGATGCCTCATATTGGAC 3481 >seq22802 Length=4402 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTG-GCCAGCTC 213199 |||| ||| | || ||||| | ||| | ||||| |||| || ||| |||| ||| Sbjct 1854 CCTTGGCTTGCAGGACTGCCTTCGTAGGTCTTATAGGGTCCAT-CTTGTTGTGCCAACTC 1912 Query 213200 GCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTT 213259 ||| | | |||| || ||||||||||||||||| ||||| | ||||| |||| Sbjct 1913 ACAGCTTGTTTCAAGGGTGGCATAGTAGATGGTTTCAAAGATCTCAATATTGAGTTTCTG 1972 Query 213260 GGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGAC 213319 ||| ||||| | || || | | ||||| | ||| | || || ||||| || || Sbjct 1973 GGCTTCTGGACTCTCAAATGGAAACCTCATGAGGATGAAAGCGTCGGCAAGCCCTTGAAC 2032 Query 213320 CCCGATGCCGATGGGTCTGTGTCTCAGGTTAGAC 213353 |||||||||||||| | || |||| ||| ||| Sbjct 2033 TCCGATGCCGATGGGACGATGCCTCATGTTGGAC 2066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929988702874880