Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq33510 123 5e-23 seq73127 93.3 8e-14 seq22802 87.8 3e-12 >seq33510 Length=29102 Score = 123 bits (136), Expect = 5e-23 Identities = 163/218 (75%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 25794 TGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCA 25852 ||||||||| |||||| ||| | |||| |||||| ||||| ||||||||||| Sbjct 26785 TGCCATCGAAACCATACC-AGCTGTAAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCG 26727 Query 25853 ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCT 25912 || | | || | || |||| || ||||||||||||| || || |||||||||| Sbjct 26726 ACCACAAAGTAGCCAGGTACAGCGAACGCGTGGTAGCCTTTGCCGCGGTCGAGGGCATCT 26667 Query 25913 TTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCA-TGCCCGGG 25971 ||||| || || ||||| || ||||||||||||||| | | | ||| | |||| || Sbjct 26666 TTTTCTCGGGATCATTTGCTGCAATCTTCTGGCTCAAGAA-ACGTGGATTAATGCCAGGC 26608 Query 25972 CTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGG 26008 || ||| || ||||| || |||||||||||||| |||| Sbjct 26607 CT-TACATTCTCCAATGAACTCATCAGCAGGGATGAGG 26571 >seq73127 Length=3785 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| ||||| |||||||| || || || || ||| | |||| ||| |||| || || Sbjct 2479 CACCTGGAATTCTCCCGAAAGAACTCTTCTGGTGTAGATGTTACTGGTGTACGGCTCTAT 2538 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 | || ||||| ||||||||||| |||||| ||| || ||||| || || | ||| || Sbjct 2539 GGATTCATTGTTTCCCAGGATCTGGGCCGTGGAGGCTGTTGGCATTGGGGCTAACAGGAG 2598 Query 221242 ACTGTTGCGCAGTCCG 221257 |||||| ||||| ||| Sbjct 2599 ACTGTTACGCAGGCCG 2614 >seq22802 Length=4402 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| ||||| ||||| || || || || || ||| | |||| ||| |||| || || Sbjct 1047 CACCTGGAATTCTCCGGAAAGAACTCTTCTGGTGTAGATGTTACTGGTGTACGGCTCTAT 1106 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 | || ||||| ||||||||||| |||||| ||| || ||||| || || | ||| || Sbjct 1107 GGATTCATTGTTTCCCAGGATCTGGGCCGTGGAGGCTGTTGGCATTGGGGCTAACAGGAG 1166 Query 221242 ACTGTTGCGCAGTCCG 221257 |||||| ||||| ||| Sbjct 1167 ACTGTTACGCAGGCCG 1182 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 221747 GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGA 221806 || |||| || ||||||||||||||||||||||||||||| || || |||| || || Sbjct 3777 GTGTACTCTACAATCTCTGTACAGAGGTTGCTGCACTTGATTGTACCAAGGTTCTTCTGG 3836 Query 221807 TTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGA 221866 || ||| | || ||| |||||||||||||| | || ||||||||| || Sbjct 3837 TTGCTCTTCCTGTTACAAGCATCCTTGTAGAGCATGTAAGGCGTTCCAGTCTCCGTTTGT 3896 Query 221867 GCCACCAGAATCT 221879 || ||||||||| Sbjct 3897 GCTTCCAGAATCT 3909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927305158470080