Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq22802 123 3e-23 seq73127 93.3 5e-14 seq33510 86.0 7e-12 >seq22802 Length=4402 Score = 123 bits (136), Expect = 3e-23 Identities = 106/131 (81%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 75887 ATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAAC 75946 ||||| || |||| |||||||||||||| || || ||||| |||||||||||||||||| Sbjct 3907 ATTCTGGAAGCACAAACGGAGACTGGAACGCCTTACATGCTCTACAAGGATGCTTGTAAC 3848 Query 75947 AAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATT 76006 | |||||| ||||| ||||| | || ||||||||| || || || || || || ||| Sbjct 3847 AGGAAGAGCAACCAGAAGAACCTTGGTACAATCAAGTGCAGCAACCTCTGTACAGAGATT 3788 Query 76007 TTAGAGTACAC 76017 |||||||||| Sbjct 3787 GTAGAGTACAC 3777 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 76487 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 76546 || || ||||||||||| || | || |||||||||||||||||||| || || ||| || Sbjct 1181 GGCCTGCGTAACAGTCTCCTGTTAGCCCCAATGCCAACAGCCTCCACGGCCCAGATCCTG 1122 Query 76547 GGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGA 76597 || || ||||||| | | || || ||||| | ||||||||| |||||| Sbjct 1121 GGAAACAATGAATCCATAGAGCCGTACACCAGTAACATCTACACCAGAAGA 1071 >seq73127 Length=3785 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 76487 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 76546 || || ||||||||||| || | || |||||||||||||||||||| || || ||| || Sbjct 2613 GGCCTGCGTAACAGTCTCCTGTTAGCCCCAATGCCAACAGCCTCCACGGCCCAGATCCTG 2554 Query 76547 GGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGA 76597 || || ||||||| | | || || ||||| | ||||||||| |||||| Sbjct 2553 GGAAACAATGAATCCATAGAGCCGTACACCAGTAACATCTACACCAGAAGA 2503 >seq33510 Length=29102 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 64984 CAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATG 65043 || ||||| | |||||| |||| ||||| | | |||||||||| | ||||| || Sbjct 26796 CAATTATTCAATGCCATCGAAACCATACCAGCTGTAAAGAAGAAGGCCGACTGGGCGCTG 26737 Query 65044 AAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGT 65102 || ||| | ||| ||||||| | | | | ||| ||| | | || ||||| || Sbjct 26736 AAGTGGATCGACCACAAAGTAGC-CAGGTACAGCGAACGCGTGGTAGCCTTTGCCGCGGT 26678 Query 65103 GGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTC 65161 ||||| ||||| ||||| || ||||| ||| || || | ||| | ||||| || || Sbjct 26677 CGAGGGCATCTTTTTCTCGGGATCATT-TGCTGCAATCTTCTGGCTCAAGAAACGTGGAT 26619 Query 65162 TCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGG 65209 | ||||||||||| ||||| |||||||| || | | ||||||| Sbjct 26618 TAATGCCAGGCCTTACATTCTCCAATGAACTCATCAGCAGGGATGAGG 26571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595580733688160