Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq33510 107 2e-17 >seq33510 Length=29102 Score = 107 bits (118), Expect = 2e-17 Identities = 150/208 (72%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 869192 CTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAG 869251 ||||| | ||| ||| || | ||||| ||||| | || || ||||||||||| ||| Sbjct 26582 CTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTGAGCCAGAAG 26641 Query 869252 ATGGCGCAGAAACTG--CCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCC 869309 || |||| || || ||||||||||||||||||||||| ||||||||| | | | | Sbjct 26642 AT--TGCAGCAAATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGGCTACCACGC 26699 Query 869310 GCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTT 869369 | ||| | || | | | | | || ||||||||||| ||||||||||||||| | Sbjct 26700 GTTCGCTGTACCTGGCTA---CTTTGTGGTCGATCCACTTCAGCGCCCAGTCGGCCTTCT 26756 Query 869370 TCCTCACCGACGGCACCGTGTCGATGGC 869397 || | || | || | || |||||||| Sbjct 26757 TCTTTACAGCTGGTATGGTTTCGATGGC 26784 Score = 107 bits (118), Expect = 2e-17 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 869715 CCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAA 869774 |||| |||||| ||||| ||||| ||||| ||||| ||||| || || || || | || Sbjct 27848 CCAGATTCTCGTTAACGATACCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAA 27907 Query 869775 AGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCACCT 869834 |||| |||| | | |||||| |||||| | || | ||| ||||| | Sbjct 27908 AGTGCTGCTCTTGCGGTTTCAGCGACTCCCAGTCCTTCATATCTTTGGAGAGATCCACTT 27967 Query 869835 CCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGGTAGC 869894 ||||||| ||||||| || || || ||||| |||||||| ||| | | ||| || Sbjct 27968 CCTCGGCTGTCCAGAAGGAAGCTTCAGCCTTCTTGTACATTCTCCAGATGTCCTGATACT 28027 Query 869895 GGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 |||||||||||| ||||| | |||||||||| Sbjct 28028 CGATAGGGAAGAGAACAAACCTCCTGGGGTTGTC 28061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6096256848581419