Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9979 111 1e-19 seq112321 105 6e-18 seq45117 105 6e-18 seq60492 102 7e-17 seq50389 87.8 2e-12 seq22802 82.4 7e-11 >seq9979 Length=2718 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || |||||||||||| | | Sbjct 2349 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTCGAAGTAGAACCTAGT 2290 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || || || Sbjct 2289 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 2230 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || || || |||||| |||| | || || || ||| Sbjct 2229 CAGCGTCTTATCTTTGCTGGAAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAAC 2170 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || ||||| || |||| Sbjct 2169 ATCCAGAAAGAGTCCACACTCCATCTTG 2142 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || |||||| | | Sbjct 2121 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 2062 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || || || Sbjct 2061 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 2002 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||| ||||| |||| | || || || ||| Sbjct 2001 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAAC 1942 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || ||||| || |||| Sbjct 1941 ATCCAGAAAGAGTCCACACTCCATCTTG 1914 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || ||||||||| | | Sbjct 2577 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCAAGT 2518 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || || || Sbjct 2517 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 2458 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || ||||| || ||||| |||| | || || || ||| Sbjct 2457 CAGCGTCTCATCTTTGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTACAAC 2398 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || || || || |||| Sbjct 2397 ATCCAGAAAGAGTCCACTCTCCATCTTG 2370 >seq112321 Length=3025 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || |||||||||||| | | Sbjct 2607 ATGCAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTCGAAGTAGAACCTAGT 2666 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || || || Sbjct 2667 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 2726 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || ||||| || ||||| |||| | || || || ||| Sbjct 2727 CAGCGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTACAAC 2786 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || ||||| || |||| Sbjct 2787 ATCCAGAAAGAGTCCACACTCCATCTTG 2814 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || |||||| | | Sbjct 2835 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 2894 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || || || Sbjct 2895 GACACCATTGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 2954 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || || || ||||| || ||||| |||| | || || || ||| Sbjct 2955 CAGCGTCTCATTTTCGCTGGTAAACAACTCGAGGACGGAAGAACATTATCCGACTACAAC 3014 Query 24884 ATTCAAAAGGA 24894 || || || || Sbjct 3015 ATCCAGAAAGA 3025 >seq45117 Length=16876 Score = 105 bits (116), Expect = 6e-18 Identities = 160/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || |||||||| || | || ||||| ||| | | Sbjct 6055 ATGCAAATTTTAGTGAAAACACTTACTGGTAAAACAATATCTCTTGAAGTTGAACCGTCA 6114 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| |||||| ||||| ||||||||||||||||| ||||| |||||| Sbjct 6115 GATACCATTGAAAACGTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCGGATCAA 6174 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | || ||| | || | |||| | || ||| |||| || || |||| || Sbjct 6175 CAGCGGCTTATATTTACAGGTAGACAGTTAGAAGATGACAGAACAATTTCTAATTACAAT 6234 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||| || || || |||||||| || |||| |||| Sbjct 6235 ATTTGTAATGAAAGCACTCTTCATTTGGTGTTACG---GCGCAGAGG 6278 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/213 (70%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| || || |||| ||| || | || ||||| || | || || || | |||| Sbjct 6298 AAAACACTTACTGGTAGAACAATATCTCTGGAAGTTCAACCGACAGATACCATTGAAAAC 6357 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 |||||| ||||| ||||||||||||||||| ||||| |||||||| | | ||||| Sbjct 6358 GTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCGGATCAACAGGGGCTTCTCTTT 6417 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAACATTCAAAAGGAATC 24897 | || | |||| | || ||| | ||||| | || |||| || ||| || ||| Sbjct 6418 ACAGGTAGACAGTTAGAAGATGACA-AAACACTTTCTAATTACAATATTTGTAATGAAAG 6476 Query 24898 GACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || |||||||| || |||| |||| Sbjct 6477 CACTCTTCATTTGGTGTTACG---GCGCAGAGG 6506 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/212 (69%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| || || |||| ||| || | || ||||| || | | || || | |||| Sbjct 6754 AAAACACTTACTGGTAGAACAATATCTCTGGAAGTTCAACCGTCAGATACCATTGAAAAC 6813 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 |||||| ||||| ||||||||||||||||| ||||| |||||||| | | || ||| Sbjct 6814 GTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCGGATCAACAGGGGCTTATATTT 6873 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || | ||| | || ||| |||| | || |||| || ||| || ||| Sbjct 6874 GCAGGTAGACATTTAGAAGATGACAGAACACTTTCTAATTACAATATTTGTAATGAAAGC 6933 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || |||||||| || |||| |||| Sbjct 6934 ACTCTTCATTTGGTGTTACG---GCGCAGAGG 6962 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| | || |||||||| || | || ||||| || | | || || | |||| Sbjct 7210 AAAACATTTACTGGTAAAACAATATCTCTTGAAGTTCAACCATCAGATACCATTGAAAAC 7269 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 |||||| ||||| ||||||||||||||||| ||||| ||||||| || | |||||| Sbjct 7270 GTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCTAATCAACAGCGGCTTATCTTT 7329 Query 24839 GCCGGGAAACAGCTGGAGGAT 24859 || || ||| || | || ||| Sbjct 7330 GCAGGTAAAGAGTTAGAAGAT 7350 >seq60492 Length=3139 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || |||||| | | Sbjct 370 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 429 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || ||||| Sbjct 430 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGATCAG 489 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || || || |||||| || | | || || || ||| Sbjct 490 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGATGGAAGGACGTTATCCGACTACAAC 549 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || ||||| || |||| Sbjct 550 ATCCAGAAAGAGTCCACACTCCATCTTG 577 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || |||||| | | Sbjct 829 ATGCAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 888 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || || ||| Sbjct 889 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAA 948 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || || || |||||| |||| | || || || ||| Sbjct 949 CAGCGGCTCATCTTTGCTGGTAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAAC 1008 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || ||||| || |||| Sbjct 1009 ATCCAGAAAGAGTCCACACTCCATCTTG 1036 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || |||||| | | Sbjct 1057 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 1116 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| || || || || || ||||| Sbjct 1117 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAGGGTATTCCACCAGATCAG 1176 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || || ||||| || ||||| |||| | || || || ||| Sbjct 1177 CAACGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACGTTATCCGACTACAAC 1236 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || ||||| || |||| Sbjct 1237 ATCCAGAAAGAGTCAACACTCCATCTTG 1264 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || |||||| | | Sbjct 1285 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 1344 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| || || || || || ||||| Sbjct 1345 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 1404 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || || || ||||| |||| | || || || ||| Sbjct 1405 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGACGGAAGAACGTTATCCGACTACAAC 1464 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || ||||| || |||| Sbjct 1465 ATCCAGAAAGAGTCCACACTCCATCTTG 1492 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || |||||| | | Sbjct 142 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 201 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || ||||| Sbjct 202 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGATCAG 261 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || || || ||||| || | | || || || ||| Sbjct 262 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGACGGAAGGACGTTATCCGACTACAAC 321 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || || || || |||| Sbjct 322 ATCCAGAAAGAGTCCACTCTCCATCTTG 349 >seq50389 Length=23789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || |||||||| || | || |||| ||| | | Sbjct 11124 ATGCACATTTTAGTGAAAACACTTACTGGTAAAACAATATCTCTGAAAGTTGAACCATCA 11065 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | ||| |||||| ||||| ||||||||||||||||| ||||| || ||| Sbjct 11064 GATACTATTGAAGATGTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGACCAA 11005 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || |||||||| | |||||| |||| ||| Sbjct 11004 CAGCGGCGTATCTTTGCAAGTAAACAGTTGGAAGAT 10969 >seq22802 Length=4402 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 |||| || ||||| || | ||| | || || |||||||| ||||| | || | || | Sbjct 3778 TGTACTCTACAATCTCTGTACAGAGGTTGCTGCACTTGATTGTACCAAGGTTCTTCTGGT 3837 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 |||| || | |||||||||||| ||||| ||||| || || || ||||| ||| ||||| Sbjct 3838 TGCTCTTCCTGTTACAAGCATCCTTGTAGAGCATGTAAGGCGTTCCAGTCTCCGTTTGTG 3897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449151855361960