Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq60492 111 1e-19 seq9979 111 1e-19 seq112321 104 2e-17 >seq60492 Length=3139 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||| ||||| ||||| ||||| |||| | | |||| Sbjct 581 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCATCC 522 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||| || || ||||| ||| | || | || |||||||| Sbjct 521 TCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCC 462 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || | ||| | | || || |||| ||| |||| Sbjct 461 TGGATTTTGGATTTGAC--ATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGG 404 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || ||||| || |||||||||||||| Sbjct 403 TCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 370 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||| ||||| ||||| ||||| |||| | | |||| Sbjct 1040 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCC 981 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||| || || || |||||| | || | || |||||||| Sbjct 980 TCGAGTTGCTTACCAGCAAAGATGAGCCGCTGTTGGTCTGGTGGAATACCTTCCTTGTCC 921 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || | ||| | | || || |||| ||| |||| Sbjct 920 TGGATTTTGGATTTGAC--ATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGG 863 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || || || |||||||||||||| Sbjct 862 TCTTGCCAGTAAGAGTTTTGACAAAGATCTGCAT 829 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| ||||| ||||| |||| | | | || || ||||| || || ||||| Sbjct 1248 CTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAA 1189 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||| ||| | || | ||||||||||| | ||||| |||||| | Sbjct 1188 GATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGGATTTTGGATTTGAC--A 1131 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| | | || || |||| ||| |||||||| || || || || || Sbjct 1130 TTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTG 1071 Query 34964 ACAAAGATCTGCAT 34977 |||||||||||||| Sbjct 1070 ACAAAGATCTGCAT 1057 Score = 102 bits (112), Expect = 5e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||| ||||| ||||| ||||| |||| | | | || Sbjct 353 AGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCC 294 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||| || || ||||| ||| | || | || |||||||| Sbjct 293 TCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTCC 234 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || | ||| | | || || |||| ||| |||| Sbjct 233 TGGATTTTGGATTTGAC--ATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGG 176 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || || || |||||||||||||| Sbjct 175 TCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 142 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| ||||| ||||| |||| | | | || || |||||||| || || || Sbjct 1476 CTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGTTGCTTACCAGCAAA 1417 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| ||| | || | ||||||||||| | ||||| |||||| | Sbjct 1416 GATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATTTTGGATTTGAC--A 1359 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| | | || || |||| ||| |||||||| || || || || || Sbjct 1358 TTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTG 1299 Query 34964 ACAAAGATCTGCAT 34977 |||||||||||||| Sbjct 1298 ACAAAGATCTGCAT 1285 >seq9979 Length=2718 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||| ||||| ||||| ||||| |||| | | |||| Sbjct 2138 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCC 2197 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||| || || ||||||||| | || | || |||||||| Sbjct 2198 TCGAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 2257 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || | ||| | | || || || | ||| |||| Sbjct 2258 TGGATTTTGGATTTGAC--ATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGG 2315 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || || || |||||||||||||| Sbjct 2316 TCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2349 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||| ||||| ||||| ||||| |||| | | | || Sbjct 1910 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCC 1969 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||| || || ||||||||| | || | || |||||||| Sbjct 1970 TCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 2029 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || | ||| | | || || |||| ||| |||| Sbjct 2030 TGGATTTTGGATTTGAC--ATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGG 2087 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || || || |||||||||||||| Sbjct 2088 TCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2121 Score = 102 bits (112), Expect = 5e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||| ||||| ||||| ||||| |||| | | | || Sbjct 2366 AGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCC 2425 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || || ||||| || || ||||||||| | || | || |||||||| Sbjct 2426 TCTAGTTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 2485 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || | ||| | | || || |||| ||| |||| Sbjct 2486 TGGATTTTGGATTTGAC--ATTCTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGATGG 2543 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || || || |||||||||||||| Sbjct 2544 TCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2577 >seq112321 Length=3025 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||| ||||| ||||| ||||| |||| | | | || Sbjct 2818 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCC 2759 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || |||||||| || || ||||||||| | || | || |||||||| Sbjct 2758 TCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 2699 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || | ||| | | || || || | ||| |||| Sbjct 2698 TGGATTTTGGATTTGAC--ATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGG 2641 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || || || || ||||||||||||||| Sbjct 2640 TCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATG 2606 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| ||||| |||| | | | || || ||||| || || ||||| Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGAAA 2966 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || || ||||||||| | || | || |||||||| | ||||| |||||| || Sbjct 2965 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGAC--AT 2908 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | ||| | | || || |||| ||| |||||||| || || || || || | Sbjct 2907 TCTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGA 2848 Query 34965 CAAAGATCTGCAT 34977 ||||||||||||| Sbjct 2847 CAAAGATCTGCAT 2835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325166432293733