Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq48055 114 2e-20 seq8964 109 9e-19 seq45117 105 1e-17 >seq48055 Length=12036 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| || ||||| | || || |||||||| ||| | || || | || | Sbjct 1499 TGCAAATATTTATGAAAACTCTTACTGGTAAAACAATAACTCTGGAAGTTGTACCGTCGG 1440 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || |||||| ||||| ||| ||| ||||| ||||| || ||||||| Sbjct 1439 AAACCATTGATAACGTAAAATCAAAAATCCAAGATAAGGAAGGAATTCCTCCTGATCAAC 1380 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | |||||||||||||| || ||||| ||| | ||||| | | || |||||| Sbjct 1379 AGAGGATTATTTTTGCAGGTAATCAGTTAGAAGATGAAAGAACACTGTCTGACTATAATG 1320 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTAC 146244 |||| || || ||| | ||| | || |||| Sbjct 1319 TACAGAACGAGAGCACTCTGCATCTTGTCTTAC 1287 >seq8964 Length=41004 Score = 109 bits (120), Expect = 9e-19 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| | | |||||| || || |||||||| ||| | || || |||| || | Sbjct 1385 TGCAAATTATTGTGAAAACACGTACTGGTAAAACAATAACTCTGGAAGTTGAACCATCA- 1443 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||| | ||| |||| |||||| ||| || ||| || ||||| || || || |||||| Sbjct 1444 GATTCCATTGAAAACGTAAAATCTAAGATTCAAGACAAGGAAGGAATCCCTCCTGATCAA 1503 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | || |||||||||||||| ||||| || ||||| | | || |||||| Sbjct 1504 CAGCGGCCTATATTTGCAGGTAAACAGTTAGAACATGGAAGAACACTTTCTGACTATAAT 1563 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 || || || || || | ||| | || |||||| ||||||| |||| ||||||| Sbjct 1564 ATTCAGAAGGAGAGCACCTTGCATCTTGTCTTACGACTAAGAGGTGGTATGCAAATATT 1622 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| || | |||||| |||| || |||||||| || | || || |||| | Sbjct 633 TGAAAATTTTTGTGAAAACACTAACTGGTAAAACAATACCTCTGGAAGTTGAACCGTCAG 692 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| |||||| ||| || ||| ||| |||| ||||| || ||||||| Sbjct 693 ATACCATTGAAAACGTAAAATCTAAGATTCAAGACAAAAAAGGAATTCCTCCTGATCAAC 752 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || || |||||||||||||||||||| || | | ||| | | |||| || | Sbjct 753 AGCGGCTTATCTTTGCAGGTAAACAATTAGAAAATGACAAAACACTCTCTAATTACAACA 812 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTAC 146244 | |||||| ||| | ||||| || |||| Sbjct 813 TTTGTAAAGAAAGCACTCTTCATTTGGTGTTAC 845 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||| | | | |||||||| || | || || |||| | Sbjct 861 TGCAAATTTTAGTGAAAACACTTAGTGATAAAACAATATCTCTGGAAGTTGAACCGTCAG 920 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| |||||| ||| || ||| ||||||| ||||| || ||||||| Sbjct 921 ATACAATTGAAAACGTAAAATTTAAGATTCAAGACGAAGAAGGAATTCCTCCTGATCAAC 980 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || |||||||||||||| ||||| ||| | | ||| | | |||| |||| Sbjct 981 AGCTTTTTATCTTTGCAGGTAAACAGTTAGAAGATGACAAAACACTTTCTAATTACAATA 1040 Query 146212 T 146212 | Sbjct 1041 T 1041 >seq45117 Length=16876 Score = 105 bits (116), Expect = 1e-17 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| | | |||||||| || || |||||||| || |||| || ||| || | Sbjct 7196 TGCAAATTGTAGTGAAAACATTTACTGGTAAAACAATATCTCTTGAAGTTCAACCATCA- 7254 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| |||| |||||| ||| || ||| |||||||| ||||| || ||||| Sbjct 7255 GATACCATTGAAAACGTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCTAATCAA 7314 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | || || |||||||||||| | ||||| ||||| | | | | | ||||| ||| Sbjct 7315 CAGCGGCTTATCTTTGCAGGTAAAGAGTTAGAAGATAAAAAATCCCTTTCTGATTACAAT 7374 Query 146211 AT 146212 || Sbjct 7375 AT 7376 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||||| | || || |||||||| | | || || |||| | Sbjct 7653 TGCAAATTTTAGAGAAAACAATTACTGGTAAAACAATATCCCTGGAAGTTGAACCGTCAG 7712 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||||||| || || || | |||||| ||||| || ||||||| Sbjct 7713 ATACCATTGAAAATGTAAAAGCTATGATTGAAGACAGAGAAGGAATTCCTCCTGATCAAC 7772 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || |||||||||||||| ||||| ||| ||||| | | ||||| |||| Sbjct 7773 AGAGGCTTATCTTTGCAGGTAAACAGTTAGAAGATGGAAGAACACTTTCTGATTACAATA 7832 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||| | || || || |||| |||| |||||||| Sbjct 7833 TTTGTAAGGAGAGCACTGTTCAGTTGGTGTTACTGTTAAAAGGAGGTA 7880 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAA-AAACAATTACTATTGATGTAGAACATAAC 146090 ||||||| || | ||||| | || || | |||||||| || |||| || |||| Sbjct 7424 TGCAAATTTTAGTGGAAACAATTACTGGTACAAACAATTTCTTTTGAAGTTGAACCGTCA 7483 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| ||||||||||| ||| || ||| |||||||| ||| | | ||| || Sbjct 7484 GATACCATTGAAAATGTAAAATCTAAGATTCAAGACAAAGAAGGAATTTCTTCTGATGAA 7543 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | || | |||||||||||||| ||| | ||| | ||||| | | |||| ||| Sbjct 7544 CAGCGGCTTCTCTTTGCAGGTAAACAGTTATAAGATGACAGAACACTTTCTAATTACAAT 7603 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGA 146255 || || ||| ||| ||||| | ||||| | |||||| Sbjct 7604 ATTAGTAATGAAAGCACTCCTCATTTGGAGTTACGGCTTAGAGGA 7648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 784863260402440