Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq60492 120 2e-22 seq9979 114 1e-20 seq112321 100 2e-16 seq45117 98.7 8e-16 seq8964 91.5 1e-13 >seq60492 Length=3139 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || ||||| ||||| || ||||| || || | | || | Sbjct 1500 ACGAAGAACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCC 1441 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || |||||||| || |||||| | || | | |||||||| || ||||||||||| || Sbjct 1440 GTCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTT 1381 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| ||||||| | || | |||||| ||||||| ||||| || || Sbjct 1380 GTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGAT 1321 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||||| ||||| |||||||| Sbjct 1320 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1285 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || || ||||| || ||||| || || | | || | Sbjct 1272 ACGAAGGACAAGATGGAGTGTTGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCC 1213 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || |||||||| ||||| | || | | ||||||||| || ||||||||||| || Sbjct 1212 GTCCTCTAGTTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCCTCCTT 1153 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| ||||||| | || | |||||| ||||||| ||||| || || Sbjct 1152 GTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGAT 1093 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||||| ||||| |||||||| Sbjct 1092 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1057 >seq9979 Length=2718 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || ||||| ||||| || ||||| || || | | || | Sbjct 2362 ACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCC 2421 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || |||||||| |||||| | || | | ||||| || || |||||||| || || Sbjct 2422 GTCCTCTAGTTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTT 2481 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| ||||||| | || | |||||| ||||||||||||| || || Sbjct 2482 GTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGAT 2541 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||||| ||||| |||||||| Sbjct 2542 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2577 >seq112321 Length=3025 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||||||||| ||||| | || | | ||||| || || |||||||| || ||| Sbjct 2989 TCCTCGAGTTGTTTACCAGCGAAAATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTG 2930 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| ||||||| | || | |||||| ||||||| ||||| || || Sbjct 2929 TCCTGGATTTTGGATTTGACATTCTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATG 2870 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||||| ||||| |||||||| Sbjct 2869 GTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2835 >seq45117 Length=16876 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 |||||||||||| ||| ||| || ||| || |||| | ||| || | ||| || Sbjct 6264 CACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGAAATTGTTCTGTCATCTTC 6205 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 | ||| | || | | |||| | | || |||||||| ||||| || ||||||||||| Sbjct 6204 TAACTGTCTACCTGTAAATATAAGCCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCTTG 6145 Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 ||| || | ||| || |||| | || || || |||| |||||||||| ||| |||| Sbjct 6144 -AATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCAAGAGATATTGTTT 6086 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| | ||||| || || || ||||| Sbjct 6085 TACCAGTAAGTGTTTTCACTAAAATTTGCAT 6055 >seq8964 Length=41004 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 |||||||||||| ||| |||||| |||||| |||| | | || || || Sbjct 841 CACCAAATGAAGAGTGCTTTCTTTACAAATGTTGTAATTAGAGAGTGTTTTGTCATTTTC 782 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 | |||||| || ||| | || | | || ||||| || ||||| || | ||||||||| Sbjct 781 TAATTGTTTACCTGCAAAGATAAGCCGCTGTTGATCAGGAGGAATTCCTTTTTTGTCTTG 722 Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 ||| || | ||| || |||| | || || || |||| ||||| |||| ||| |||| Sbjct 721 -AATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCCAGAGGTATTGTTT 663 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||||||| ||||| ||||| || | |||| Sbjct 662 TACCAGTTAGTGTTTTCACAAAAATTTTCATT 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384596628832587