Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq117541 91.5 2e-13 seq119581 87.8 2e-12 seq73421 87.8 2e-12 seq29095 87.8 2e-12 seq5675 87.8 2e-12 >seq117541 Length=12207 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||||||||| ||| ||||| | ||| |||||||||||||||| Sbjct 4165 TTCCTCGGTAGTATAGTGGTTAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 4224 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 4225 CCCCGCCGGGGAG 4237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 3245 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 3304 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 3305 CCCCGCCGGGGAG 3317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 3421 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 3480 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 3481 CCCCGCCGGGGAG 3493 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 3068 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 3127 Query 8717 CCCCGACGAGG 8727 ||||| || || Sbjct 3128 CCCCGCCGGGG 3138 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 3246 TCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 3305 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 3306 CCCGCCGGGGAGG 3318 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 3422 TCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 3481 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 3482 CCCGCCGGGGAGG 3494 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | || |||||||||||||||| Sbjct 3800 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGTGGAAGACCGGGGTTCGATT 3859 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 3860 CCCCGCCGGGGAG 3872 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 4166 TCCTCGGTAGTATAGTGGTTAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 4225 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 4226 CCCGCCGGGGAG 4237 >seq119581 Length=6039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 4462 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 4403 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 4402 CCCCGCCGGGGAG 4390 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||| || |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 4023 TCCCCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 3964 Query 8718 CCCGACGAGGAG 8729 |||| ||||||| Sbjct 3963 CCCGCCGAGGAG 3952 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 4461 TCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 4402 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 4401 CCCGCCGGGGAGG 4389 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||| || |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 4023 TCCCCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 3964 Query 11789 CCCGACGAGGAG 11800 |||| ||||||| Sbjct 3963 CCCGCCGAGGAG 3952 >seq73421 Length=1588 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 525 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 466 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 465 CCCCGCCGGGGAG 453 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 1284 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 1225 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 1224 CCCCGCCGGGGAG 1212 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 524 TCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 465 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 464 CCCGCCGGGGAGG 452 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 1283 TCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 1224 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 1223 CCCGCCGGGGAGG 1211 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| ||| | |||||||||||||||| Sbjct 148 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACACTGAAGACCGGGGTTCGATT 89 Query 8717 CCCCGACGAGGAG 8729 ||||| | |||| Sbjct 88 CCCCGCTGGGGAG 76 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 1094 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 1035 Query 8717 CCCCGACGAGGAG 8729 ||||| | |||| Sbjct 1034 CCCCGCCAGGGAG 1022 >seq29095 Length=1000 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 387 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 328 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 327 CCCCGCCGGGGAG 315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 755 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 696 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 695 CCCCGCCGGGGAG 683 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 945 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 886 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 885 CCCCGCCGGGGAG 873 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 386 TCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 327 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 326 CCCGCCGGGGAGG 314 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 754 TCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 695 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 694 CCCGCCGGGGAGG 682 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 944 TCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 885 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 884 CCCGCCGGGGAGG 872 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||| ||||||||||| Sbjct 200 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACTGGGGTTCGATT 141 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 140 CCCCGCCGGGGAG 128 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| ||| |||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 578 TTCCTCGGTAGCATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 519 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 518 CCCCGCCGGGGAG 506 >seq5675 Length=1212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 243 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 184 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 183 CCCCGCCGGGGAG 171 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||| || |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 564 TTCCACGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 505 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 504 CCCCGACGGGGAG 492 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 753 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 694 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 693 CCCCGCCGGGGAG 681 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 242 TCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 183 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 182 CCCGCCGGGGAGG 170 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||| || |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 563 TCCACGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 504 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 503 CCCGACGGGGAGG 491 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 752 TCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 693 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 692 CCCGCCGGGGAGG 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 651762652620080