Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq9979 122 8e-23 seq112321 114 1e-20 seq60492 113 4e-20 >seq9979 Length=2718 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | ||| ||||||||||||||| || Sbjct 1925 GTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGCTGCTTTCCA 1984 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||| || || || ||||||||||| ||| || ||| Sbjct 1985 GCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 2044 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | || || || || | ||||| ||| ||||| ||||||||| Sbjct 2045 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTT 2104 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 2105 TTGACAAAGATCTGCAT 2121 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | || |||||||| ||||| || Sbjct 2153 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCGAGTTGCTTTCCA 2212 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||| || || || ||||||||||| ||| || ||| Sbjct 2213 GCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 2272 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | || || || |||| ||||| ||| ||||| ||||||||| Sbjct 2273 ACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGTCAGAGTT 2332 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 2333 TTGACAAAGATCTGCAT 2349 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | || |||||| || || || || Sbjct 2381 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTGTTTACCA 2440 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | ||||| ||||||||||| || || || ||||||||||| ||| || ||| Sbjct 2441 GCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 2500 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | || || || || | ||||| ||| ||||| ||||||||| Sbjct 2501 ACATTCTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAGAGTT 2560 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 2561 TTGACAAAGATCTGCAT 2577 >seq112321 Length=3025 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | || |||||| || || || || Sbjct 2803 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTGTTTACCA 2744 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| ||||||||||| || || || ||||||||||| ||| || ||| Sbjct 2743 GCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 2684 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | || || || |||| ||||| ||| ||||| ||||| ||| Sbjct 2683 ACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGTCAGTGTT 2624 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 2623 TTGACAAAGATCTGCATG 2606 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||| || || || ||| ||||||| ||||||||||| || || || |||||||| Sbjct 2990 GTCCTCGAGTTGTTTACCAGCGAAAATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTT 2931 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || |||| | ||||| ||||| | || || || || | ||||| Sbjct 2930 GTCCTGGATTTTGGATTTGACATTCTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGAT 2871 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| ||||||||||| || || |||||||| Sbjct 2870 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2835 >seq60492 Length=3139 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | ||| ||||||||| ||||| || Sbjct 338 GTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCCTCGAGTTGCTTACCA 279 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || |||||||| || || || || ||||||||||| ||| || ||| Sbjct 278 GCAAAGATAAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 219 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | || || || || | ||||| ||| ||||| ||||||||| Sbjct 218 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTT 159 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 158 TTGACAAAGATCTGCAT 142 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | || |||||||| ||||| || Sbjct 1025 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCGAGTTGCTTACCA 966 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | ||||||||||| ||||| || || || ||||||||||| ||| || ||| Sbjct 965 GCAAAGATGAGCCGCTGTTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 906 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | || || || || | ||||| ||| ||||| || |||||| Sbjct 905 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTT 846 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 845 TTGACAAAGATCTGCAT 829 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | ||| ||||||||| ||||| || Sbjct 1481 GTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGTTGCTTACCA 1422 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || |||||||| || || || || || |||||||| ||| || ||| Sbjct 1421 GCAAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATTTTGGATTTG 1362 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | || || || || | ||||| ||| ||||| ||||||||| Sbjct 1361 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTT 1302 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 1301 TTGACAAAGATCTGCAT 1285 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | ||| |||||||| ||||| || Sbjct 566 GTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCATCCTCGAGTTGCTTACCA 507 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || |||||||| || || || || ||||||||||| ||| || ||| Sbjct 506 GCAAAGATAAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 447 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | || || || || | ||||| ||| ||||| ||||| ||| Sbjct 446 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTT 387 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 386 TTGACAAAGATCTGCAT 370 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || ||||| ||| | ||| |||||| || || || || Sbjct 1253 GTTGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCTAGTTGTTTACCA 1194 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| || ||||| || || || || || |||||||| ||| || ||| Sbjct 1193 GCGAAGATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGGATTTTGGATTTG 1134 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | || || || || | ||||| ||| ||||| ||||||||| Sbjct 1133 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTT 1074 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 1073 TTGACAAAGATCTGCAT 1057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482619487724680