Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq9979 132 3e-26 seq60492 129 4e-25 seq112321 120 2e-22 seq8964 87.8 1e-12 >seq9979 Length=2718 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| |||||| |||||| || |||||||| ||||| Sbjct 2350 ACCACCACGGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGA 2409 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | |||| || | |||||| || ||||| || | ||||||||| ||| | || Sbjct 2410 TAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGG 2469 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||| ||| | ||| || | |||||| |||| ||| | Sbjct 2470 AATACCTTCCTTGTCCTGGATTTTGGATTTGA-CATTCTCGATGGTGTCACTTGGTTCTA 2528 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | ||||| ||||||||||||||| Sbjct 2529 CTTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCATA 2578 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| || ||| |||||| || |||||||| ||||| Sbjct 1895 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 1954 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | |||| || | || ||||| ||||| || | ||||||||| ||| | || Sbjct 1955 AACGTTCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 2014 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| ||||| ||| | ||| || | |||||| |||| ||| || Sbjct 2015 ATACCTTCCTTGTCCTGGATTTTGGATTTGA-CATTCTCGATGGTGTCACTTGGTTCTAC 2073 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || || | ||||| ||||||||||||||| Sbjct 2074 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCATA 2122 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| || ||| |||||| || |||||||| ||||| Sbjct 2122 ACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 2181 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | | || || | ||| ||||| ||||| || | ||||||||| ||| | || Sbjct 2182 TAATGTTCTTCCATCCTCGAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 2241 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||| ||| | ||| || | |||||| || | ||| | Sbjct 2242 AATACCTTCCTTGTCCTGGATTTTGGATTTGA-CATTCTCGATGGTGTCACTAGGTTCTA 2300 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | ||||| ||||||||||||||| Sbjct 2301 CTTCGAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCATA 2350 >seq60492 Length=3139 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| |||||| |||||| || |||||||| ||||| Sbjct 369 ACCACCACGGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGA 310 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| || | ||| || || ||||| || | ||||||||||||| | || Sbjct 309 TAACGTCCTTCCGTCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGTGG 250 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||| | || |||| || | |||||| |||| ||| | Sbjct 249 AATACCTTCCTTGTCCTGGATTTT-GGATTTGACATTCTCGATGGTGTCACTTGGTTCTA 191 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | ||||| ||||||||||||||| Sbjct 190 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCATA 141 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| || ||| |||||| || |||||||| ||||| Sbjct 597 ACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 538 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || || | ||| || || ||||| || | ||||||||||||| | || Sbjct 537 TAACGTCCTTCCATCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGG 478 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||| | || |||| || | |||||| |||| ||| | Sbjct 477 AATACCTTCCTTGTCCTGGATTTT-GGATTTGACATTCTCGATGGTGTCACTTGGTTCTA 419 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | ||||| ||||||||||||||| Sbjct 418 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCATA 369 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| || ||| |||||| || |||||||| ||||| Sbjct 1511 CCACCACGGAGACGAAGAACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 1452 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | |||| || | ||| || || ||||| || | ||||||||||||| | || Sbjct 1451 AACGTTCTTCCGTCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGA 1392 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| ||||| | || |||| || | |||||| |||| ||| || Sbjct 1391 ATACCCTCCTTGTCCTGGATTTT-GGATTTGACATTCTCGATGGTGTCACTTGGTTCTAC 1333 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || || | ||||| ||||||||||||||| Sbjct 1332 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCATA 1284 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| || ||| |||||| || |||||||| ||||| Sbjct 1056 ACCACCGCGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 997 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | | || || | ||| || || ||||| || | ||||| || ||| | || Sbjct 996 TAATGTTCTTCCATCCTCGAGTTGCTTACCAGCAAAGATGAGCCGCTGTTGGTCTGGTGG 937 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||| ||| | ||| || | |||||| |||| ||| | Sbjct 936 AATACCTTCCTTGTCCTGGATTTTGGATTTGA-CATTCTCGATGGTGTCACTTGGTTCTA 878 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | ||||| ||||||||||||||| Sbjct 877 CCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACAAAGATCTGCATA 828 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| || || |||||| || |||||||| ||||| Sbjct 1284 ACCACCACGGAGACGAAGGACAAGATGGAGTGTTGACTCTTTCTGGATGTTGTAGTCGGA 1225 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| || | |||||| || || || || | ||| ||||||||| | || Sbjct 1224 TAACGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGG 1165 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||||| ||| | ||| || | |||||| |||| ||| | Sbjct 1164 AATACCCTCCTTGTCCTGGATTTTGGATTTGA-CATTCTCGATGGTGTCACTTGGTTCTA 1106 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | ||||| ||||||||||||||| Sbjct 1105 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCATA 1056 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| || ||| |||||| || |||||||| ||||| Sbjct 141 ACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 82 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| || | |||||| || || || || | ||||||||||||| | || Sbjct 81 TAACGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGATCTGGTGG 22 Query 33642 CACACCTTCTTTGTC 33656 | |||||| ||||| Sbjct 21 AATACCTTCCTTGTC 7 >seq112321 Length=3025 Score = 120 bits (132), Expect = 2e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || |||||||| ||||| | ||| | | |||| || | |||||| || || ||| Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGAAA 2966 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||||||||| ||| | || | |||||| ||||| ||||| ||| | ||| Sbjct 2965 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGA-CATT 2907 Query 33679 GTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| |||||| |||| ||| || |||| ||||| || || || || | ||||| || Sbjct 2906 CTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGAC 2847 Query 33738 AAAGATCTGCATA 33750 ||||||||||||| Sbjct 2846 AAAGATCTGCATA 2834 Score = 114 bits (126), Expect = 8e-21 Identities = 168/234 (72%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| || ||| |||||| || |||||||| ||||| Sbjct 2834 ACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 2775 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | |||| || | |||||| || || || || | ||||||||| ||| | || Sbjct 2774 TAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGG 2715 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||| ||| | ||| || | |||||| || | ||| | Sbjct 2714 AATACCTTCCTTGTCCTGGATTTTGGATTTGA-CATTCTCGATGGTGTCACTAGGTTCTA 2656 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 | || | ||||| || || || || | ||||| |||||||||||||| |||| Sbjct 2655 CTTCGAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCAT-GTTG 2603 >seq8964 Length=41004 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 33536 GTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGT 33595 ||||||||||||| |||||||| ||||| |||||||||| |||||||| || | Sbjct 845 GTAACACCAAATGAAGAGTGCTTTCTTTACAAATGTTGTAATTAGAGAGTGTTTTGTCAT 786 Query 33596 CGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGT 33655 || |||||||| || ||||| || | ||||| ||||| | || | |||| ||||| Sbjct 785 TTTCTAATTGTTTACCTGCAAAGATAAGCCGCTGTTGATCAGGAGGAATTCCTTTTTTGT 726 Query 33656 CGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATC 33714 | ||| || | || || | || | ||| || | ||| || || | | || Sbjct 725 CTTGAATCTT-AGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCCAGAGGTATT 667 Query 33715 GTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||||| |||| ||||| ||||| || | ||| Sbjct 666 GTTTTACCAGTTAGTGTTTTCACAAAAATTTTCAT 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328172765749440