Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq9979 105 2e-17 seq112321 91.5 3e-13 seq60492 91.5 3e-13 >seq9979 Length=2718 Score = 105 bits (116), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || || || ||||| | ||||| ||| | |||| Sbjct 2346 CAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTCGAAGTAGAACCTAGTGAC 2287 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||| | ||| || || || || ||||| ||| || ||| || Sbjct 2286 ACCATCGAGAATGTCAAATCCAAA-ATCCAGGACAAGGAAGGTATTCCCCCAGACCAGCA 2228 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | |||||||| || |||||||| | || |||||||| || || |||| |||||| | Sbjct 2227 GCGTCTTATCTTTGCTGGAAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAACAT 2168 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||||| || || || ||||| Sbjct 2167 CCAGAAAGAGTCCACACTCCATCTTGT 2141 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || || || ||||| | || || ||| |||| Sbjct 2118 CAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGTGAC 2059 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||| | ||| || || || || ||||| ||| || ||| || Sbjct 2058 ACCATCGAGAATGTCAAATCCAAA-ATCCAGGACAAGGAAGGTATTCCCCCAGACCAGCA 2000 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | |||||||| || ||||||||| | || || ||||| || || |||| |||||| | Sbjct 1999 GCGTCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAACAT 1940 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||||| || || || ||||| Sbjct 1939 CCAGAAAGAGTCCACACTCCATCTTGT 1913 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || || || ||||| | ||||| ||| |||| Sbjct 2574 CAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCAAGTGAC 2515 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||| | ||| || || || || ||||| ||| || ||| || Sbjct 2514 ACCATCGAGAATGTCAAATCCAAA-ATCCAGGACAAGGAAGGTATTCCACCAGACCAGCA 2456 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || ||||| || || || || | || || ||||| || || |||| |||||| | Sbjct 2455 GCGTCTCATCTTTGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTACAACAT 2396 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||||| ||||| || ||||| Sbjct 2395 CCAGAAAGAGTCCACTCTCCATCTTGT 2369 >seq112321 Length=3025 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || || || ||||| | ||||| ||| | |||| Sbjct 2610 CAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTCGAAGTAGAACCTAGTGAC 2669 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||| | ||| || || || || ||||| ||| || ||| || Sbjct 2670 ACCATCGAGAATGTCAAATCCAAA-ATCCAGGACAAGGAAGGTATTCCACCAGACCAGCA 2728 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || |||||||| || || || | || || ||||| || || |||| |||||| | Sbjct 2729 GCGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTACAACAT 2788 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||||| || || || ||||| Sbjct 2789 CCAGAAAGAGTCCACACTCCATCTTGT 2815 >seq60492 Length=3139 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || || || ||||| | || || ||| |||| Sbjct 145 CAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGTGAC 204 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||| | ||| || || || || ||||| ||| || || || Sbjct 205 ACCATCGAGAATGTCAAATCCAAA-ATCCAGGACAAGGAAGGTATTCCACCAGATCAGCA 263 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | |||||||| || || ||||| | || || |||||||| || |||| |||||| | Sbjct 264 GCGTCTTATCTTTGCTGGTAAGCAACTCGAGGACGGAAGGACGTTATCCGACTACAACAT 323 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||||| ||||| || ||||| Sbjct 324 CCAGAAAGAGTCCACTCTCCATCTTGT 350 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || || || ||||| | || || ||| |||| Sbjct 373 CAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGTGAC 432 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||| | ||| || || || || ||||| ||| || || || Sbjct 433 ACCATCGAGAATGTCAAATCCAAA-ATCCAGGACAAGGAAGGTATTCCCCCAGATCAGCA 491 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | |||||||| || || ||||| | || ||||||||||| || |||| |||||| | Sbjct 492 GCGTCTTATCTTTGCTGGTAAGCAACTCGAGGATGGAAGGACGTTATCCGACTACAACAT 551 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||||| || || || ||||| Sbjct 552 CCAGAAAGAGTCCACACTCCATCTTGT 578 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || || || ||||| | || || ||| |||| Sbjct 832 CAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGTGAC 891 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||| | ||| || || || || ||||| ||| || ||| || Sbjct 892 ACCATCGAGAATGTCAAATCCAAA-ATCCAGGACAAGGAAGGTATTCCACCAGACCAACA 950 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || ||||| || || ||||| | || |||||||| || || |||| |||||| | Sbjct 951 GCGGCTCATCTTTGCTGGTAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAACAT 1010 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||||| || || || ||||| Sbjct 1011 CCAGAAAGAGTCCACACTCCATCTTGT 1037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179812854330047