Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq9979 95.1 1e-14 seq60492 91.5 1e-13 seq8964 91.5 1e-13 seq45117 89.7 5e-13 seq48055 86.0 6e-12 seq112321 84.2 2e-11 seq71731 84.2 2e-11 >seq9979 Length=2718 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||| || | ||| || | || || || || ||||| || || || ||||||||||| | Sbjct 1894 TCCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 1953 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 |||| | | ||| |||||||| || || ||||| || | ||||||||| || || | Sbjct 1954 TAACGTTCT-TCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGG 2012 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || ||||| |||||| || | ||||| | ||| | Sbjct 2013 GAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTA 2072 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| || || || | |||||| || || || ||||| Sbjct 2073 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2121 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| || | || || || || ||||| || || || ||||||||||| | Sbjct 2123 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 2182 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || ||||| || || || ||||| || | ||||||||| || || || Sbjct 2183 AATGTTCTTCCA-TCCTCGAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 2241 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || ||||| |||||| || | ||||| | ||| || Sbjct 2242 AATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTAC 2301 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | |||||| || || || ||||| Sbjct 2302 TTCGAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2349 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || || || || ||||| || || || |||||||||||| Sbjct 2351 CCACCACGGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAT 2410 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| || || ||||| || ||||| || | ||||||||| || || || Sbjct 2411 AATGTTCTTCCGTCCTCTAGTTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGA 2470 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || ||||| |||||| || | ||||| | ||| || Sbjct 2471 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACT 2530 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | |||||| || || || ||||| Sbjct 2531 TCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2577 >seq60492 Length=3139 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| || | ||| || | || || || || ||||| || || || |||||||||||| Sbjct 1512 TCCACCACGGAGACGAAGAACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 1453 Query 134546 -AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 |||| | | ||| ||||| || || || ||||| || | |||||||||||| || | Sbjct 1452 TAACGTTCTTCC-GTCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGG 1394 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || ||||| |||||| || | ||||| | ||| | Sbjct 1393 GAATACCCTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTA 1334 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| || || || | |||||| || || || ||||| Sbjct 1333 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1285 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || || || || ||||| || || || |||||||||||| Sbjct 368 CCACCACGGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAT 309 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| ||||| || || || ||||| || | |||||||||||| || || Sbjct 308 AACGTCCTTCCGTCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGA 249 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || ||||| |||||| || | ||||| | ||| || Sbjct 248 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACC 189 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | |||||| || || || ||||| Sbjct 188 TCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC- 134545 || || | ||| || | || || || || ||||| || || || |||||||||||| Sbjct 596 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 537 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 |||| | | || ||||| || || || ||||| || | |||||||||||| || || Sbjct 536 AACGTCCTTCCA-TCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGG 478 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || ||||| |||||| || | ||||| | ||| || Sbjct 477 AATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTAC 418 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | ||||| || || || ||||| Sbjct 417 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 370 >seq8964 Length=41004 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | |||||| |||||||| || ||| |||| ||||| || || || ||||||| Sbjct 1014 TCTTCTAACTGTTTACCTGCAAAGATAAAAAGCTGTTGATCAGGAGGAATTCCTTCTTCG 955 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 |||||||| || ||| || || | ||| || |||| ||| || || |||| || Sbjct 954 TCTTGAATCTTAAATTTTACGTTTTCAATTGTATCTGACGGTTCAACTTCCAGAGATATT 895 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||| | | | ||||| || ||||||||||| Sbjct 894 GTTTTATCACTAAGTGTTTTCACTAAAATTTGCAT 860 >seq45117 Length=16876 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | |||| | |||| ||| || | ||||| ||||| || || || |||||||| Sbjct 6209 TCTTCTAACTGTCTACCTGTAAATATAAGCCGCTGTTGATCCGGAGGAATTCCTTCTTTG 6150 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGTAAT 134677 |||||||| || ||| || | | ||||| | || |||| ||| || || |||| || Sbjct 6149 TCTTGAATCTTAGATTTTAC-GTTTTCAATGGTATCTGACGGTTCAACTTCAAGAGATAT 6091 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || | ||||| || ||||||||||| Sbjct 6090 TGTTTTACCAGTAAGTGTTTTCACTAAAATTTGCAT 6055 >seq48055 Length=12036 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | ||| || ||||||||||| | | ||| ||||| || || || ||||| || Sbjct 1346 TCTTCTAACTGATTACCTGCAAAAATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTA 1405 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||| |||||| ||| || || | || || |||| | | || || ||||| || Sbjct 1406 TCTTGGATTTTTGATTTTACGTTATCAATGGTTTCCGACGGTACAACTTCCAGAGTTATT 1465 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || | |||||| | || |||||||| Sbjct 1466 GTTTTACCAGTAAGAGTTTTCATAAATATTTGCAT 1500 >seq112321 Length=3025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || || || || ||||| || || || |||||||||||| Sbjct 2833 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 2774 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| || || ||||| || || || || | ||||||||| || || || Sbjct 2773 AATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGA 2714 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || ||||| |||||| || | ||||| | ||| || Sbjct 2713 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACT 2654 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || ||||| || || || | ||||| || || || ||||| ||| Sbjct 2653 TCGAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTTG 2603 >seq71731 Length=19556 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/241 (68%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || |||| |||| |||||| || | ||||||||||||||||||| ||| || Sbjct 3965 TTCCACCCTTGAGGCGCATCACGAGATGGATAGTGGATTCCTTTTGAATGTAGTAATCTG 3906 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||||| | ||||| || ||| || ||| | || | || |||| || || | Sbjct 3905 CCACGGTTTTCTTTTCGTCTAGTTGTACCCCAGCATATATGAGGCGTTGCTCTTCTGGTG 3846 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 |||| || || || || || || | || || || ||| | || | ||||| Sbjct 3845 GTATACCAATCTTGTCCTGTATCTTCTTCTTTACTGCAGAGAATTTATCCTCTGCTTCCA 3786 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT-TTTGTTTTTG 134723 | |||| |||||||||| | | || |||||| | || || | ||||| ||||| ||| Sbjct 3785 CCTCGATAGTAATGGTTCTCTCCGTCAAAGTTCTCACAAAGAGCTGCATGGTTGTTGTTG 3726 Query 134724 T 134724 | Sbjct 3725 T 3725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504560657929640